Index

A

aaggregate() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) abbr (bionty.CellLine attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Tissue attribute) (clinicore.Medication attribute) (findrefs.Reference attribute) (ourprojects.Reference attribute) absolute() (lamindb.UPath method) abulk_create() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) abulk_update() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) access_token (lamindb.setup.core.UserSettings attribute) acontains() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) acount() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) acreate() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) add() (lamindb.core.LabelManager method) add_feature_set() (lamindb.core.FeatureManager method) add_from() (lamindb.core.LabelManager method) add_new_from() (lamindb.core.AnnDataCurator method) (lamindb.core.DataFrameCurator method) (lamindb.core.MuDataCurator method) add_new_from_columns() (lamindb.core.AnnDataCurator method) (lamindb.core.DataFrameCurator method) (lamindb.core.MuDataCurator method) add_new_from_var_index() (lamindb.core.AnnDataCurator method) (lamindb.core.MuDataCurator method) add_source() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (clinicore.Medication class method) add_synonym() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Tissue method) (cellregistry.Cell method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (findrefs.Reference method) (lamindb.core.CanValidate method) (lamindb.Feature method) (lamindb.Param method) (lamindb.ULabel method) (lamindb.User method) (omop.CareSite method) (omop.CdmSource method) (omop.Cohort method) (omop.CohortDefinition method) (omop.Concept method) (omop.ConceptAncestor method) (omop.ConceptRelationship method) (omop.ConceptSynonym method) (omop.ConditionEra method) (omop.ConditionOccurrence method) (omop.Cost method) (omop.Death method) (omop.DeviceExposure method) (omop.Domain method) (omop.DoseEra method) (omop.DrugEra method) (omop.DrugExposure method) (omop.DrugStrength method) (omop.Episode method) (omop.EpisodeEvent method) (omop.FactRelationship method) (omop.Location method) (omop.Measurement method) (omop.Metadata method) (omop.Note method) (omop.NoteNlp method) (omop.Observation method) (omop.ObservationPeriod method) (omop.PayerPlanPeriod method) (omop.Person method) (omop.ProcedureOccurrence method) (omop.Provider method) (omop.Relationship method) (omop.SourceToConceptMap method) (omop.Specimen method) (omop.VisitDetail method) (omop.VisitOccurrence method) (omop.Vocabulary method) (ourprojects.Reference method) (wetlab.Biosample method) (wetlab.CombinationTreatment method) (wetlab.CompoundTreatment method) (wetlab.EnvironmentalTreatment method) (wetlab.Experiment method) (wetlab.GeneticTreatment method) (wetlab.Techsample method) (wetlab.TreatmentTarget method) (wetlab.Well method) add_to_class() (lamindb.core.Registry method) add_validated_from() (lamindb.core.AnnDataCurator method) (lamindb.core.DataFrameCurator method) (lamindb.core.MuDataCurator method) add_validated_from_var_index() (lamindb.core.AnnDataCurator method) (lamindb.core.MuDataCurator method) add_values() (lamindb.core.FeatureManager method) (lamindb.core.ParamManager method) address_1 (omop.Location attribute) address_2 (omop.Location attribute) adelete() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Source method) (bionty.Tissue method) (cellregistry.Cell method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (findrefs.Reference method) (lamindb.Artifact method) (lamindb.Collection method) (lamindb.core.FeatureValue method) (lamindb.core.IsVersioned method) (lamindb.core.ParamValue method) (lamindb.core.QuerySet method) (lamindb.core.Record method) (lamindb.core.TracksRun method) (lamindb.core.TracksUpdates method) (lamindb.Feature method) (lamindb.FeatureSet method) (lamindb.Param method) (lamindb.Run method) (lamindb.Storage method) (lamindb.Transform method) (lamindb.ULabel method) (lamindb.User method) (omop.CareSite method) (omop.CdmSource method) (omop.Cohort method) (omop.CohortDefinition method) (omop.Concept method) (omop.ConceptAncestor method) (omop.ConceptRelationship method) (omop.ConceptSynonym method) (omop.ConditionEra method) (omop.ConditionOccurrence method) (omop.Cost method) (omop.Death method) (omop.DeviceExposure method) (omop.Domain method) (omop.DoseEra method) (omop.DrugEra method) (omop.DrugExposure method) (omop.DrugStrength method) (omop.Episode method) (omop.EpisodeEvent method) (omop.FactRelationship method) (omop.Location method) (omop.Measurement method) (omop.Metadata method) (omop.Note method) (omop.NoteNlp method) (omop.Observation method) (omop.ObservationPeriod method) (omop.PayerPlanPeriod method) (omop.Person method) (omop.ProcedureOccurrence method) (omop.Provider method) (omop.Relationship method) (omop.SourceToConceptMap method) (omop.Specimen method) (omop.VisitDetail method) (omop.VisitOccurrence method) (omop.Vocabulary method) (ourprojects.Reference method) (wetlab.Biosample method) (wetlab.CombinationTreatment method) (wetlab.CompoundTreatment method) (wetlab.EnvironmentalTreatment method) (wetlab.Experiment method) (wetlab.GeneticTreatment method) (wetlab.Techsample method) (wetlab.TreatmentTarget method) (wetlab.Well method) administered_datetime (clinicore.Treatment attribute) admitted_from_concept (omop.VisitDetail attribute) (omop.VisitOccurrence attribute) admitted_from_source_value (omop.VisitDetail attribute) (omop.VisitOccurrence attribute) aearliest() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) aexists() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) aexplain() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) afirst() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) age (clinicore.Patient attribute) aget() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) aget_or_create() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) aggregate() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) ain_bulk() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) aiterator() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) alast() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) alatest() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) alias() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method)

all() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) amount_allowed (omop.Cost attribute) amount_unit_concept (omop.DrugStrength attribute) amount_value (omop.DrugStrength attribute) anatomic_site_concept (omop.Specimen attribute) anatomic_site_source_value (omop.Specimen attribute) ancestor_concept (omop.ConceptAncestor attribute) anchor (lamindb.UPath property) anndata_file_pbmc68k_test() (in module lamindb.core.datasets) anndata_human_immune_cells() (in module lamindb.core.datasets) anndata_mouse_sc_lymph_node() (in module lamindb.core.datasets) anndata_pbmc3k_processed() (in module lamindb.core.datasets) anndata_pbmc68k_reduced() (in module lamindb.core.datasets) anndata_suo22_Visium10X() (in module lamindb.core.datasets) anndata_with_obs() (in module lamindb.core.datasets) AnnDataAccessor (class in lamindb.core.storage) AnnDataCurator (class in lamindb.core) annotate() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) api_key (lamindb.setup.core.UserSettings attribute) append() (lamindb.core.RecordsList method) arefresh_from_db() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Source method) (bionty.Tissue method) (cellregistry.Cell method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (findrefs.Reference method) (lamindb.Artifact method) (lamindb.Collection method) (lamindb.core.FeatureValue method) (lamindb.core.IsVersioned method) (lamindb.core.ParamValue method) (lamindb.core.Record method) (lamindb.core.TracksRun method) (lamindb.core.TracksUpdates method) (lamindb.Feature method) (lamindb.FeatureSet method) (lamindb.Param method) (lamindb.Run method) (lamindb.Storage method) (lamindb.Transform method) (lamindb.ULabel method) (lamindb.User method) (omop.CareSite method) (omop.CdmSource method) (omop.Cohort method) (omop.CohortDefinition method) (omop.Concept method) (omop.ConceptAncestor method) (omop.ConceptRelationship method) (omop.ConceptSynonym method) (omop.ConditionEra method) (omop.ConditionOccurrence method) (omop.Cost method) (omop.Death method) (omop.DeviceExposure method) (omop.Domain method) (omop.DoseEra method) (omop.DrugEra method) (omop.DrugExposure method) (omop.DrugStrength method) (omop.Episode method) (omop.EpisodeEvent method) (omop.FactRelationship method) (omop.Location method) (omop.Measurement method) (omop.Metadata method) (omop.Note method) (omop.NoteNlp method) (omop.Observation method) (omop.ObservationPeriod method) (omop.PayerPlanPeriod method) (omop.Person method) (omop.ProcedureOccurrence method) (omop.Provider method) (omop.Relationship method) (omop.SourceToConceptMap method) (omop.Specimen method) (omop.VisitDetail method) (omop.VisitOccurrence method) (omop.Vocabulary method) (ourprojects.Reference method) (wetlab.Biosample method) (wetlab.CombinationTreatment method) (wetlab.CompoundTreatment method) (wetlab.EnvironmentalTreatment method) (wetlab.Experiment method) (wetlab.GeneticTreatment method) (wetlab.Techsample method) (wetlab.TreatmentTarget method) (wetlab.Well method) args (lamindb.core.exceptions.DoesNotExist attribute) (lamindb.core.exceptions.IntegrityError attribute) (lamindb.core.exceptions.InvalidArgument attribute) (lamindb.core.exceptions.MissingContextUID attribute) (lamindb.core.exceptions.NotebookNotSaved attribute) (lamindb.core.exceptions.NoTitleError attribute) (lamindb.core.exceptions.RecordNameChangeIntegrityError attribute) (lamindb.core.exceptions.UpdateContext attribute) (lamindb.core.exceptions.ValidationError attribute) Artifact (class in lamindb) artifact_if_hash_exists (lamindb.core.subsettings.CreationSettings attribute) artifact_silence_missing_run_warning (lamindb.core.subsettings.CreationSettings attribute) artifact_skip_size_hash (lamindb.core.subsettings.CreationSettings attribute) artifacts (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) (clinicore.Biosample attribute) (clinicore.ClinicalTrial attribute) (clinicore.Medication attribute) (clinicore.Patient attribute) (clinicore.Treatment attribute) (findrefs.Reference attribute) (lamindb.Collection attribute) (lamindb.core.FeatureValue attribute) (lamindb.core.ParamValue attribute) (lamindb.FeatureSet attribute) (lamindb.Storage attribute) (lamindb.ULabel attribute) (ourprojects.Reference attribute) (wetlab.Biosample attribute) (wetlab.CombinationTreatment attribute) (wetlab.CompoundTreatment attribute) (wetlab.EnvironmentalTreatment attribute) (wetlab.Experiment attribute) (wetlab.GeneticTreatment attribute) (wetlab.Techsample attribute) (wetlab.TreatmentTarget attribute) (wetlab.Well attribute) ArtifactType (in module lamindb.core.types) as_manager() (lamindb.core.QuerySet class method) as_posix() (lamindb.UPath method) as_uri() (lamindb.UPath method) asave() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Source method) (bionty.Tissue method) (cellregistry.Cell method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (findrefs.Reference method) (lamindb.Artifact method) (lamindb.Collection method) (lamindb.core.FeatureValue method) (lamindb.core.IsVersioned method) (lamindb.core.ParamValue method) (lamindb.core.Record method) (lamindb.core.TracksRun method) (lamindb.core.TracksUpdates method) (lamindb.Feature method) (lamindb.FeatureSet method) (lamindb.Param method) (lamindb.Run method) (lamindb.Storage method) (lamindb.Transform method) (lamindb.ULabel method) (lamindb.User method) (omop.CareSite method) (omop.CdmSource method) (omop.Cohort method) (omop.CohortDefinition method) (omop.Concept method) (omop.ConceptAncestor method) (omop.ConceptRelationship method) (omop.ConceptSynonym method) (omop.ConditionEra method) (omop.ConditionOccurrence method) (omop.Cost method) (omop.Death method) (omop.DeviceExposure method) (omop.Domain method) (omop.DoseEra method) (omop.DrugEra method) (omop.DrugExposure method) (omop.DrugStrength method) (omop.Episode method) (omop.EpisodeEvent method) (omop.FactRelationship method) (omop.Location method) (omop.Measurement method) (omop.Metadata method) (omop.Note method) (omop.NoteNlp method) (omop.Observation method) (omop.ObservationPeriod method) (omop.PayerPlanPeriod method) (omop.Person method) (omop.ProcedureOccurrence method) (omop.Provider method) (omop.Relationship method) (omop.SourceToConceptMap method) (omop.Specimen method) (omop.VisitDetail method) (omop.VisitOccurrence method) (omop.Vocabulary method) (ourprojects.Reference method) (wetlab.Biosample method) (wetlab.CombinationTreatment method) (wetlab.CompoundTreatment method) (wetlab.EnvironmentalTreatment method) (wetlab.Experiment method) (wetlab.GeneticTreatment method) (wetlab.Techsample method) (wetlab.TreatmentTarget method) (wetlab.Well method) aupdate() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) aupdate_or_create() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) auto_connect (lamindb.setup.core.SetupSettings property) auto_created (lamindb.core.QueryManager attribute)

B

BackedAccessor (class in lamindb.core.storage) BaseCurator (class in lamindb.core) batch (clinicore.Biosample attribute) (wetlab.Biosample attribute) (wetlab.Techsample attribute) BFXPipeline (class in bionty.base) bionty module bionty.base module bionty.core module

BioRecord (class in bionty.core) BioSample (class in bionty.base) Biosample (class in clinicore) (class in wetlab) biosamples (wetlab.Techsample attribute) biotype (bionty.Gene attribute) birth_date (clinicore.Patient attribute) birth_datetime (omop.Person attribute) box_size (omop.DrugStrength attribute) bulk_create() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) bulk_update() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method)

C

cache() (lamindb.Artifact method) (lamindb.Collection method) cache_dir (lamindb.core.Settings property) (lamindb.setup.core.SetupSettings property) (lamindb.setup.core.StorageSettings property) CanValidate (class in lamindb.core) care_site (omop.Person attribute) (omop.Provider attribute) (omop.VisitDetail attribute) (omop.VisitOccurrence attribute) care_site_id (omop.CareSite attribute) care_site_name (omop.CareSite attribute) care_site_source_value (omop.CareSite attribute) CareSite (class in omop) categoricals (lamindb.core.AnnDataCurator property) (lamindb.core.MuDataCurator property) cause_concept (omop.Death attribute) cause_source_concept (omop.Death attribute) cause_source_value (omop.Death attribute) cdm_etl_reference (omop.CdmSource attribute) cdm_holder (omop.CdmSource attribute) cdm_release_date (omop.CdmSource attribute) cdm_source_abbreviation (omop.CdmSource attribute) cdm_source_name (omop.CdmSource attribute) cdm_version (omop.CdmSource attribute) cdm_version_concept (omop.CdmSource attribute) CdmSource (class in omop) Cell (class in cellregistry) cell_lines (wetlab.Biosample attribute) cell_types (clinicore.Biosample attribute) (wetlab.Biosample attribute) CellLine (class in bionty) (class in bionty.base) CellMarker (class in bionty) (class in bionty.base) cellregistry module CellType (class in bionty) (class in bionty.base) check() (lamindb.core.QueryManager method) check_vars_non_aligned() (lamindb.core.MappedCollection method) check_vars_sorted() (lamindb.core.MappedCollection method) chembl_id (clinicore.Medication attribute) children (lamindb.Run attribute) (lamindb.ULabel attribute) chmod() (lamindb.UPath method) city (omop.Location attribute) clean() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Source method) (bionty.Tissue method) (cellregistry.Cell method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (findrefs.Reference method) (lamindb.Artifact method) (lamindb.Collection method) (lamindb.core.FeatureValue method) (lamindb.core.IsVersioned method) (lamindb.core.ParamValue method) (lamindb.core.Record method) (lamindb.core.TracksRun method) (lamindb.core.TracksUpdates method) (lamindb.Feature method) (lamindb.FeatureSet method) (lamindb.Param method) (lamindb.Run method) (lamindb.Storage method) (lamindb.Transform method) (lamindb.ULabel method) (lamindb.User method) (omop.CareSite method) (omop.CdmSource method) (omop.Cohort method) (omop.CohortDefinition method) (omop.Concept method) (omop.ConceptAncestor method) (omop.ConceptRelationship method) (omop.ConceptSynonym method) (omop.ConditionEra method) (omop.ConditionOccurrence method) (omop.Cost method) (omop.Death method) (omop.DeviceExposure method) (omop.Domain method) (omop.DoseEra method) (omop.DrugEra method) (omop.DrugExposure method) (omop.DrugStrength method) (omop.Episode method) (omop.EpisodeEvent method) (omop.FactRelationship method) (omop.Location method) (omop.Measurement method) (omop.Metadata method) (omop.Note method) (omop.NoteNlp method) (omop.Observation method) (omop.ObservationPeriod method) (omop.PayerPlanPeriod method) (omop.Person method) (omop.ProcedureOccurrence method) (omop.Provider method) (omop.Relationship method) (omop.SourceToConceptMap method) (omop.Specimen method) (omop.VisitDetail method) (omop.VisitOccurrence method) (omop.Vocabulary method) (ourprojects.Reference method) (wetlab.Biosample method) (wetlab.CombinationTreatment method) (wetlab.CompoundTreatment method) (wetlab.EnvironmentalTreatment method) (wetlab.Experiment method) (wetlab.GeneticTreatment method) (wetlab.Techsample method) (wetlab.TreatmentTarget method) (wetlab.Well method) clean_fields() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Source method) (bionty.Tissue method) (cellregistry.Cell method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (findrefs.Reference method) (lamindb.Artifact method) (lamindb.Collection method) (lamindb.core.FeatureValue method) (lamindb.core.IsVersioned method) (lamindb.core.ParamValue method) (lamindb.core.Record method) (lamindb.core.TracksRun method) (lamindb.core.TracksUpdates method) (lamindb.Feature method) (lamindb.FeatureSet method) (lamindb.Param method) (lamindb.Run method) (lamindb.Storage method) (lamindb.Transform method) (lamindb.ULabel method) (lamindb.User method) (omop.CareSite method) (omop.CdmSource method) (omop.Cohort method) (omop.CohortDefinition method) (omop.Concept method) (omop.ConceptAncestor method) (omop.ConceptRelationship method) (omop.ConceptSynonym method) (omop.ConditionEra method) (omop.ConditionOccurrence method) (omop.Cost method) (omop.Death method) (omop.DeviceExposure method) (omop.Domain method) (omop.DoseEra method) (omop.DrugEra method) (omop.DrugExposure method) (omop.DrugStrength method) (omop.Episode method) (omop.EpisodeEvent method) (omop.FactRelationship method) (omop.Location method) (omop.Measurement method) (omop.Metadata method) (omop.Note method) (omop.NoteNlp method) (omop.Observation method) (omop.ObservationPeriod method) (omop.PayerPlanPeriod method) (omop.Person method) (omop.ProcedureOccurrence method) (omop.Provider method) (omop.Relationship method) (omop.SourceToConceptMap method) (omop.Specimen method) (omop.VisitDetail method) (omop.VisitOccurrence method) (omop.Vocabulary method) (ourprojects.Reference method) (wetlab.Biosample method) (wetlab.CombinationTreatment method) (wetlab.CompoundTreatment method) (wetlab.EnvironmentalTreatment method) (wetlab.Experiment method) (wetlab.GeneticTreatment method) (wetlab.Techsample method) (wetlab.TreatmentTarget method) (wetlab.Well method)

clean_up_failed_runs() (lamindb.core.AnnDataCurator method) (lamindb.core.DataFrameCurator method) clear() (lamindb.core.RecordsList method) clinical_trial (clinicore.Biosample attribute) ClinicalTrial (class in clinicore) clinicore module close() (in module lamindb.setup) (lamindb.core.MappedCollection method) (lamindb.core.storage.AnnDataAccessor method) closed (lamindb.core.MappedCollection property) (lamindb.core.storage.AnnDataAccessor property) cloud_to_local() (lamindb.setup.core.StorageSettings method) cloud_to_local_no_update() (lamindb.setup.core.StorageSettings method) code (lamindb.core.exceptions.DoesNotExist attribute) (lamindb.core.exceptions.InvalidArgument attribute) (lamindb.core.exceptions.MissingContextUID attribute) (lamindb.core.exceptions.NotebookNotSaved attribute) (lamindb.core.exceptions.RecordNameChangeIntegrityError attribute) (lamindb.core.exceptions.UpdateContext attribute) (lamindb.core.exceptions.ValidationError attribute) Cohort (class in omop) cohort_definition_description (omop.CohortDefinition attribute) cohort_definition_id (omop.Cohort attribute) (omop.CohortDefinition attribute) cohort_definition_name (omop.CohortDefinition attribute) cohort_definition_syntax (omop.CohortDefinition attribute) cohort_end_date (omop.Cohort attribute) cohort_initiation_date (omop.CohortDefinition attribute) cohort_start_date (omop.Cohort attribute) CohortDefinition (class in omop) Collection (class in lamindb) collections (clinicore.ClinicalTrial attribute) (lamindb.Artifact attribute) (lamindb.ULabel attribute) column (wetlab.Well attribute) CombinationTreatment (class in wetlab) complex_filter() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) COMPOSITE (lamindb.core.storage.VALID_SUFFIXES attribute) compounds (wetlab.CombinationTreatment attribute) (wetlab.CompoundTreatment attribute) CompoundTreatment (class in wetlab) concentration (wetlab.CompoundTreatment attribute) concentration_unit (wetlab.CompoundTreatment attribute) Concept (class in omop) concept (omop.ConceptSynonym attribute) concept_class (omop.Concept attribute) concept_code (omop.Concept attribute) concept_id (omop.Concept attribute) concept_id_1 (omop.ConceptRelationship attribute) concept_id_2 (omop.ConceptRelationship attribute) concept_name (omop.Concept attribute) concept_synonym_name (omop.ConceptSynonym attribute) ConceptAncestor (class in omop) ConceptRelationship (class in omop) ConceptSynonym (class in omop) condition_concept (omop.ConditionEra attribute) (omop.ConditionOccurrence attribute) condition_end_date (omop.ConditionOccurrence attribute) condition_end_datetime (omop.ConditionOccurrence attribute) condition_era_end_date (omop.ConditionEra attribute) condition_era_id (omop.ConditionEra attribute) condition_era_start_date (omop.ConditionEra attribute) condition_occurrence_count (omop.ConditionEra attribute) condition_occurrence_id (omop.ConditionOccurrence attribute) condition_source_concept (omop.ConditionOccurrence attribute) condition_source_value (omop.ConditionOccurrence attribute) condition_start_date (omop.ConditionOccurrence attribute) condition_start_datetime (omop.ConditionOccurrence attribute) condition_status_concept (omop.ConditionOccurrence attribute) condition_status_source_value (omop.ConditionOccurrence attribute) condition_type_concept (omop.ConditionOccurrence attribute) ConditionEra (class in omop) ConditionOccurrence (class in omop) connect() (in module lamindb) contains() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) Context (class in lamindb.core) context (in module lamindb) contribute_to_class() (lamindb.core.QueryManager method) copy() (lamindb.core.RecordsList method) Cost (class in omop) cost_domain (omop.Cost attribute) cost_event_id (omop.Cost attribute) cost_id (omop.Cost attribute) cost_type_concept (omop.Cost attribute) count() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) (lamindb.core.RecordsList method) country_concept (omop.Location attribute) country_source_value (omop.Location attribute) county (omop.Location attribute) create() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) (lamindb.setup.migrate class method) create_relationship() (bionty.base.Ontology method) create_term() (bionty.base.Ontology method) created_artifacts (lamindb.User attribute) created_at (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) (cellregistry.Cell attribute) (clinicore.Biosample attribute) (clinicore.ClinicalTrial attribute) (clinicore.Medication attribute) (clinicore.Patient attribute) (clinicore.Treatment attribute) (findrefs.Reference attribute) (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.core.FeatureValue attribute) (lamindb.core.ParamValue attribute) (lamindb.Feature attribute) (lamindb.FeatureSet attribute) (lamindb.Param attribute) (lamindb.Run attribute) (lamindb.Storage attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) (lamindb.User attribute) (ourprojects.Reference attribute) (wetlab.Biosample attribute) (wetlab.CombinationTreatment attribute) (wetlab.CompoundTreatment attribute) (wetlab.EnvironmentalTreatment attribute) (wetlab.Experiment attribute) (wetlab.GeneticTreatment attribute) (wetlab.Techsample attribute) (wetlab.TreatmentTarget attribute) (wetlab.Well attribute) created_by (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) (cellregistry.Cell attribute) (clinicore.Biosample attribute) (clinicore.ClinicalTrial attribute) (clinicore.Medication attribute) (clinicore.Patient attribute) (clinicore.Treatment attribute) (findrefs.Reference attribute) (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.core.FeatureValue attribute) (lamindb.core.ParamValue attribute) (lamindb.core.TracksRun attribute) (lamindb.Feature attribute) (lamindb.FeatureSet attribute) (lamindb.Param attribute) (lamindb.Run attribute) (lamindb.Storage attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) (ourprojects.Reference attribute) (wetlab.Biosample attribute) (wetlab.CombinationTreatment attribute) (wetlab.CompoundTreatment attribute) (wetlab.EnvironmentalTreatment attribute) (wetlab.Experiment attribute) (wetlab.GeneticTreatment attribute) (wetlab.Techsample attribute) (wetlab.TreatmentTarget attribute) (wetlab.Well attribute) created_by_id (lamindb.core.TracksRun attribute) created_runs (lamindb.User attribute) created_transforms (lamindb.User attribute) creation (lamindb.core.Settings property) creation_counter (lamindb.core.QueryManager attribute) CreationSettings (class in lamindb.core.subsettings) CurateLookup (class in lamindb.core) Curator (class in lamindb) currency_concept (omop.Cost attribute) currently_used (bionty.Source attribute) cwd() (lamindb.UPath class method)

D

data_artifact (lamindb.Collection property) dataframe_artifact (bionty.Source attribute) DataFrameCurator (class in lamindb.core) date (wetlab.Experiment attribute) date_error_message() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Source method) (bionty.Tissue method) (cellregistry.Cell method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (findrefs.Reference method) (lamindb.Artifact method) (lamindb.Collection method) (lamindb.core.FeatureValue method) (lamindb.core.IsVersioned method) (lamindb.core.ParamValue method) (lamindb.core.Record method) (lamindb.core.TracksRun method) (lamindb.core.TracksUpdates method) (lamindb.Feature method) (lamindb.FeatureSet method) (lamindb.Param method) (lamindb.Run method) (lamindb.Storage method) (lamindb.Transform method) (lamindb.ULabel method) (lamindb.User method) (omop.CareSite method) (omop.CdmSource method) (omop.Cohort method) (omop.CohortDefinition method) (omop.Concept method) (omop.ConceptAncestor method) (omop.ConceptRelationship method) (omop.ConceptSynonym method) (omop.ConditionEra method) (omop.ConditionOccurrence method) (omop.Cost method) (omop.Death method) (omop.DeviceExposure method) (omop.Domain method) (omop.DoseEra method) (omop.DrugEra method) (omop.DrugExposure method) (omop.DrugStrength method) (omop.Episode method) (omop.EpisodeEvent method) (omop.FactRelationship method) (omop.Location method) (omop.Measurement method) (omop.Metadata method) (omop.Note method) (omop.NoteNlp method) (omop.Observation method) (omop.ObservationPeriod method) (omop.PayerPlanPeriod method) (omop.Person method) (omop.ProcedureOccurrence method) (omop.Provider method) (omop.Relationship method) (omop.SourceToConceptMap method) (omop.Specimen method) (omop.VisitDetail method) (omop.VisitOccurrence method) (omop.Vocabulary method) (ourprojects.Reference method) (wetlab.Biosample method) (wetlab.CombinationTreatment method) (wetlab.CompoundTreatment method) (wetlab.EnvironmentalTreatment method) (wetlab.Experiment method) (wetlab.GeneticTreatment method) (wetlab.Techsample method) (wetlab.TreatmentTarget method) (wetlab.Well method) dates() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) datetimes() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) day_of_birth (omop.Person attribute) days_supply (omop.DrugExposure attribute) db (lamindb.core.QueryManager property) (lamindb.core.QuerySet property) (lamindb.setup.core.InstanceSettings property) db_manager() (lamindb.core.QueryManager method) dea (omop.Provider attribute) Death (class in omop) death_date (omop.Death attribute) death_datetime (omop.Death attribute) death_type_concept (omop.Death attribute) deceased (clinicore.Patient attribute) deceased_date (clinicore.Patient attribute) deconstruct() (lamindb.core.QueryManager method) defer() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) defined_migrations() (lamindb.setup.migrate class method) defines_ancestry (omop.Relationship attribute) definition_type_concept (omop.CohortDefinition attribute) delete() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Source method) (bionty.Tissue method) (cellregistry.Cell method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (findrefs.Reference method) (in module lamindb.setup) (lamindb.Artifact method) (lamindb.Collection method) (lamindb.core.FeatureValue method) (lamindb.core.IsVersioned method) (lamindb.core.ParamValue method) (lamindb.core.QuerySet method) (lamindb.core.Record method) (lamindb.core.TracksRun method) (lamindb.core.TracksUpdates method) (lamindb.Feature method) (lamindb.FeatureSet method) (lamindb.Param method) (lamindb.Run method) (lamindb.Storage method) (lamindb.Transform method) (lamindb.ULabel method) (lamindb.User method) (omop.CareSite method) (omop.CdmSource method) (omop.Cohort method) (omop.CohortDefinition method) (omop.Concept method) (omop.ConceptAncestor method) (omop.ConceptRelationship method) (omop.ConceptSynonym method) (omop.ConditionEra method) (omop.ConditionOccurrence method) (omop.Cost method) (omop.Death method) (omop.DeviceExposure method) (omop.Domain method) (omop.DoseEra method) (omop.DrugEra method) (omop.DrugExposure method) (omop.DrugStrength method) (omop.Episode method) (omop.EpisodeEvent method) (omop.FactRelationship method) (omop.Location method) (omop.Measurement method) (omop.Metadata method) (omop.Note method) (omop.NoteNlp method) (omop.Observation method) (omop.ObservationPeriod method) (omop.PayerPlanPeriod method) (omop.Person method) (omop.ProcedureOccurrence method) (omop.Provider method) (omop.Relationship method) (omop.SourceToConceptMap method) (omop.Specimen method) (omop.VisitDetail method) (omop.VisitOccurrence method) (omop.Vocabulary method) (ourprojects.Reference method) (wetlab.Biosample method) (wetlab.CombinationTreatment method) (wetlab.CompoundTreatment method) (wetlab.EnvironmentalTreatment method) (wetlab.Experiment method) (wetlab.GeneticTreatment method) (wetlab.Techsample method) (wetlab.TreatmentTarget method) (wetlab.Well method) denominator_unit_concept (omop.DrugStrength attribute) denominator_value (omop.DrugStrength attribute) deploy() (lamindb.setup.migrate class method) deployed_migrations() (lamindb.setup.migrate class method) descendant_concept (omop.ConceptAncestor attribute) describe() (lamindb.Artifact method) (lamindb.Collection method) description (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) (clinicore.Biosample attribute) (clinicore.ClinicalTrial attribute) (clinicore.Medication attribute) (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.Feature attribute) (lamindb.Storage attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) (wetlab.Biosample attribute) (wetlab.CombinationTreatment attribute) (wetlab.Experiment attribute) (wetlab.Techsample attribute) (wetlab.TreatmentTarget attribute)

DevelopmentalStage (class in bionty) (class in bionty.base) device_concept (omop.DeviceExposure attribute) device_exposure_end_date (omop.DeviceExposure attribute) device_exposure_end_datetime (omop.DeviceExposure attribute) device_exposure_id (omop.DeviceExposure attribute) device_exposure_start_date (omop.DeviceExposure attribute) device_exposure_start_datetime (omop.DeviceExposure attribute) device_source_concept (omop.DeviceExposure attribute) device_source_value (omop.DeviceExposure attribute) device_type_concept (omop.DeviceExposure attribute) DeviceExposure (class in omop) df (lamindb.core.InspectResult property) df() (bionty.base.BFXPipeline method) (bionty.base.BioSample method) (bionty.base.CellLine method) (bionty.base.CellMarker method) (bionty.base.CellType method) (bionty.base.DevelopmentalStage method) (bionty.base.Disease method) (bionty.base.Drug method) (bionty.base.Ethnicity method) (bionty.base.ExperimentalFactor method) (bionty.base.Gene method) (bionty.base.Organism method) (bionty.base.Pathway method) (bionty.base.Phenotype method) (bionty.base.Protein method) (bionty.base.PublicOntology method) (bionty.base.Tissue method) (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.core.StaticReference method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Source class method) (bionty.Tissue class method) (cellregistry.Cell class method) (clinicore.Biosample class method) (clinicore.ClinicalTrial class method) (clinicore.Medication class method) (clinicore.Patient class method) (clinicore.Treatment class method) (findrefs.Reference class method) (lamindb.Artifact class method) (lamindb.Collection class method) (lamindb.core.FeatureValue class method) (lamindb.core.ParamValue class method) (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) (lamindb.core.Record class method) (lamindb.core.RecordsList method) (lamindb.core.Registry method) (lamindb.Feature class method) (lamindb.FeatureSet class method) (lamindb.Param class method) (lamindb.Run class method) (lamindb.Storage class method) (lamindb.Transform class method) (lamindb.ULabel class method) (lamindb.User class method) (omop.CareSite class method) (omop.CdmSource class method) (omop.Cohort class method) (omop.CohortDefinition class method) (omop.Concept class method) (omop.ConceptAncestor class method) (omop.ConceptRelationship class method) (omop.ConceptSynonym class method) (omop.ConditionEra class method) (omop.ConditionOccurrence class method) (omop.Cost class method) (omop.Death class method) (omop.DeviceExposure class method) (omop.Domain class method) (omop.DoseEra class method) (omop.DrugEra class method) (omop.DrugExposure class method) (omop.DrugStrength class method) (omop.Episode class method) (omop.EpisodeEvent class method) (omop.FactRelationship class method) (omop.Location class method) (omop.Measurement class method) (omop.Metadata class method) (omop.Note class method) (omop.NoteNlp class method) (omop.Observation class method) (omop.ObservationPeriod class method) (omop.PayerPlanPeriod class method) (omop.Person class method) (omop.ProcedureOccurrence class method) (omop.Provider class method) (omop.Relationship class method) (omop.SourceToConceptMap class method) (omop.Specimen class method) (omop.VisitDetail class method) (omop.VisitOccurrence class method) (omop.Vocabulary class method) (ourprojects.Reference class method) (wetlab.Biosample class method) (wetlab.CombinationTreatment class method) (wetlab.CompoundTreatment class method) (wetlab.EnvironmentalTreatment class method) (wetlab.Experiment class method) (wetlab.GeneticTreatment class method) (wetlab.Techsample class method) (wetlab.TreatmentTarget class method) (wetlab.Well class method) df_iris() (in module lamindb.core.datasets) df_iris_in_meter() (in module lamindb.core.datasets) df_iris_in_meter_study1() (in module lamindb.core.datasets) df_iris_in_meter_study2() (in module lamindb.core.datasets) dialect (lamindb.setup.core.InstanceSettings property) diff() (bionty.base.BFXPipeline method) (bionty.base.BioSample method) (bionty.base.CellLine method) (bionty.base.CellMarker method) (bionty.base.CellType method) (bionty.base.DevelopmentalStage method) (bionty.base.Disease method) (bionty.base.Drug method) (bionty.base.Ethnicity method) (bionty.base.ExperimentalFactor method) (bionty.base.Gene method) (bionty.base.Organism method) (bionty.base.Pathway method) (bionty.base.Phenotype method) (bionty.base.Protein method) (bionty.base.PublicOntology method) (bionty.base.Tissue method) (bionty.core.StaticReference method) difference() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) dir_iris_images() (in module lamindb.core.datasets) dir_scrnaseq_cellranger() (in module lamindb.core.datasets) discharged_to_concept (omop.VisitDetail attribute) (omop.VisitOccurrence attribute) discharged_to_source_value (omop.VisitDetail attribute) (omop.VisitOccurrence attribute) Disease (class in bionty) (class in bionty.base) disease_status_concept (omop.Specimen attribute) disease_status_source_value (omop.Specimen attribute) diseases (clinicore.Biosample attribute) (wetlab.Biosample attribute) display_available_sources() (in module bionty.base) display_currently_used_sources() (in module bionty.base) distinct() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) django() (in module lamindb.setup) DoesNotExist doi (findrefs.Reference attribute) (ourprojects.Reference attribute) Domain (class in omop) domain_concept (omop.Domain attribute) domain_concept_id_1 (omop.FactRelationship attribute) domain_concept_id_2 (omop.FactRelationship attribute) domain_id (omop.Concept attribute) (omop.Domain attribute) domain_name (omop.Domain attribute) dosage (clinicore.Treatment attribute) dosage_unit (clinicore.Treatment attribute) dose_era_end_date (omop.DoseEra attribute) dose_era_id (omop.DoseEra attribute) dose_era_start_date (omop.DoseEra attribute) dose_unit_source_value (omop.DrugExposure attribute) dose_value (omop.DoseEra attribute) DoseEra (class in omop) download_to() (lamindb.UPath method) drg_concept (omop.Cost attribute) drg_source_value (omop.Cost attribute) drive (lamindb.UPath property) Drug (class in bionty.base) drug_concept (omop.DoseEra attribute) (omop.DrugEra attribute) (omop.DrugExposure attribute) (omop.DrugStrength attribute) drug_era_end_date (omop.DrugEra attribute) drug_era_id (omop.DrugEra attribute) drug_era_start_date (omop.DrugEra attribute) drug_exposure_count (omop.DrugEra attribute) drug_exposure_end_date (omop.DrugExposure attribute) drug_exposure_end_datetime (omop.DrugExposure attribute) drug_exposure_id (omop.DrugExposure attribute) drug_exposure_start_date (omop.DrugExposure attribute) drug_exposure_start_datetime (omop.DrugExposure attribute) drug_source_concept (omop.DrugExposure attribute) drug_source_value (omop.DrugExposure attribute) drug_type_concept (omop.DrugExposure attribute) DrugEra (class in omop) DrugExposure (class in omop) DrugStrength (class in omop) dtype (lamindb.Feature attribute) (lamindb.FeatureSet attribute) (lamindb.Param attribute) dump() (bionty.base.Ontology method) dumps() (bionty.base.Ontology method) duration (clinicore.Treatment attribute) (wetlab.CompoundTreatment attribute) (wetlab.EnvironmentalTreatment attribute)

E

earliest() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) email (lamindb.setup.core.UserSettings attribute) encoding_concept (omop.Note attribute) ensembl_gene_id (bionty.Gene attribute) ensembl_gene_ids (bionty.Protein attribute) entity (bionty.Source attribute) environment (lamindb.Run attribute) environmentals (wetlab.CombinationTreatment attribute) EnvironmentalTreatment (class in wetlab) Episode (class in omop) episode (omop.EpisodeEvent attribute) episode_concept (omop.Episode attribute) episode_end_date (omop.Episode attribute) episode_end_datetime (omop.Episode attribute) episode_event_field_concept (omop.EpisodeEvent attribute) episode_id (omop.Episode attribute) episode_number (omop.Episode attribute) episode_object_concept (omop.Episode attribute) episode_parent_id (omop.Episode attribute) episode_source_concept (omop.Episode attribute) episode_source_value (omop.Episode attribute) episode_start_date (omop.Episode attribute)

episode_start_datetime (omop.Episode attribute) episode_type_concept (omop.Episode attribute) EpisodeEvent (class in omop) Ethnicity (class in bionty) (class in bionty.base) ethnicity (clinicore.Patient attribute) ethnicity_concept (omop.Person attribute) ethnicity_source_concept (omop.Person attribute) ethnicity_source_value (omop.Person attribute) event_id (omop.EpisodeEvent attribute) exclude() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) exists() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) (lamindb.UPath method) expanduser() (lamindb.UPath method) Experiment (class in wetlab) ExperimentalFactor (class in bionty) (class in bionty.base) explain() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) extend() (lamindb.core.RecordsList method) extra() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method)

F

fact_id_1 (omop.FactRelationship attribute) fact_id_2 (omop.FactRelationship attribute) FactRelationship (class in omop) fake_bio_notebook_titles() (in module lamindb.core.datasets) family_source_value (omop.PayerPlanPeriod attribute) Feature (class in lamindb) feature (lamindb.core.FeatureValue attribute) feature_sets (bionty.CellMarker attribute) (bionty.Gene attribute) (bionty.Pathway attribute) (bionty.Protein attribute) (lamindb.Artifact attribute) (lamindb.Feature attribute) FeatureManager (class in lamindb.core) features (lamindb.Artifact attribute) (lamindb.FeatureSet attribute) FeatureSet (class in lamindb) FeatureValue (class in lamindb.core) FieldAttr (in module lamindb.core.fields) fields (bionty.base.BFXPipeline property) (bionty.base.BioSample property) (bionty.base.CellLine property) (bionty.base.CellMarker property) (bionty.base.CellType property) (bionty.base.DevelopmentalStage property) (bionty.base.Disease property) (bionty.base.Drug property) (bionty.base.Ethnicity property) (bionty.base.ExperimentalFactor property) (bionty.base.Gene property) (bionty.base.Organism property) (bionty.base.Pathway property) (bionty.base.Phenotype property) (bionty.base.Protein property) (bionty.base.PublicOntology property) (bionty.base.Tissue property) (bionty.core.StaticReference property) (lamindb.core.AnnDataCurator property) (lamindb.core.DataFrameCurator property) file_bam() (in module lamindb.core.datasets) file_fastq() (in module lamindb.core.datasets) file_fcs() (in module lamindb.core.datasets) file_fcs_alpert19() (in module lamindb.core.datasets) file_jpg_paradisi05() (in module lamindb.core.datasets) file_mini_csv() (in module lamindb.core.datasets) file_tiff_suo22() (in module lamindb.core.datasets) file_tsv_rnaseq_nfcore_salmon_merged_gene_counts() (in module lamindb.core.datasets) filter() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Source class method) (bionty.Tissue class method) (cellregistry.Cell class method) (clinicore.Biosample class method) (clinicore.ClinicalTrial class method) (clinicore.Medication class method) (clinicore.Patient class method) (clinicore.Treatment class method) (findrefs.Reference class method) (lamindb.Artifact class method) (lamindb.Collection class method) (lamindb.core.FeatureManager class method) (lamindb.core.FeatureValue class method) (lamindb.core.ParamManager class method) (lamindb.core.ParamValue class method) (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) (lamindb.core.Record class method) (lamindb.core.Registry method) (lamindb.Feature class method) (lamindb.FeatureSet class method) (lamindb.Param class method) (lamindb.Run class method) (lamindb.Storage class method) (lamindb.Transform class method) (lamindb.ULabel class method) (lamindb.User class method) (omop.CareSite class method) (omop.CdmSource class method) (omop.Cohort class method) (omop.CohortDefinition class method) (omop.Concept class method) (omop.ConceptAncestor class method) (omop.ConceptRelationship class method) (omop.ConceptSynonym class method) (omop.ConditionEra class method) (omop.ConditionOccurrence class method) (omop.Cost class method) (omop.Death class method) (omop.DeviceExposure class method) (omop.Domain class method) (omop.DoseEra class method) (omop.DrugEra class method) (omop.DrugExposure class method) (omop.DrugStrength class method) (omop.Episode class method) (omop.EpisodeEvent class method) (omop.FactRelationship class method) (omop.Location class method) (omop.Measurement class method) (omop.Metadata class method) (omop.Note class method) (omop.NoteNlp class method) (omop.Observation class method) (omop.ObservationPeriod class method) (omop.PayerPlanPeriod class method) (omop.Person class method) (omop.ProcedureOccurrence class method) (omop.Provider class method) (omop.Relationship class method) (omop.SourceToConceptMap class method) (omop.Specimen class method) (omop.VisitDetail class method) (omop.VisitOccurrence class method) (omop.Vocabulary class method) (ourprojects.Reference class method) (wetlab.Biosample class method) (wetlab.CombinationTreatment class method) (wetlab.CompoundTreatment class method) (wetlab.EnvironmentalTreatment class method) (wetlab.Experiment class method) (wetlab.GeneticTreatment class method) (wetlab.Techsample class method) (wetlab.TreatmentTarget class method) (wetlab.Well class method)

findrefs module finish() (in module lamindb) (lamindb.core.Context method) finished_at (lamindb.Run attribute) first() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) frac_validated (lamindb.core.InspectResult property) from_anndata() (lamindb.Artifact class method) (lamindb.Curator class method) from_df() (lamindb.Artifact class method) (lamindb.Curator class method) (lamindb.Feature class method) (lamindb.FeatureSet class method) from_dir() (lamindb.Artifact class method) from_mudata() (lamindb.Artifact class method) (lamindb.Curator class method) from_obo_library() (bionty.base.Ontology class method) from_public() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (clinicore.Medication class method) from_queryset() (lamindb.core.QueryManager class method) from_source() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (clinicore.Medication class method) from_values() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (cellregistry.Cell class method) (clinicore.Biosample class method) (clinicore.ClinicalTrial class method) (clinicore.Medication class method) (clinicore.Patient class method) (clinicore.Treatment class method) (findrefs.Reference class method) (lamindb.core.CanValidate class method) (lamindb.Feature class method) (lamindb.FeatureSet class method) (lamindb.Param class method) (lamindb.ULabel class method) (lamindb.User class method) (omop.CareSite class method) (omop.CdmSource class method) (omop.Cohort class method) (omop.CohortDefinition class method) (omop.Concept class method) (omop.ConceptAncestor class method) (omop.ConceptRelationship class method) (omop.ConceptSynonym class method) (omop.ConditionEra class method) (omop.ConditionOccurrence class method) (omop.Cost class method) (omop.Death class method) (omop.DeviceExposure class method) (omop.Domain class method) (omop.DoseEra class method) (omop.DrugEra class method) (omop.DrugExposure class method) (omop.DrugStrength class method) (omop.Episode class method) (omop.EpisodeEvent class method) (omop.FactRelationship class method) (omop.Location class method) (omop.Measurement class method) (omop.Metadata class method) (omop.Note class method) (omop.NoteNlp class method) (omop.Observation class method) (omop.ObservationPeriod class method) (omop.PayerPlanPeriod class method) (omop.Person class method) (omop.ProcedureOccurrence class method) (omop.Provider class method) (omop.Relationship class method) (omop.SourceToConceptMap class method) (omop.Specimen class method) (omop.VisitDetail class method) (omop.VisitOccurrence class method) (omop.Vocabulary class method) (ourprojects.Reference class method) (wetlab.Biosample class method) (wetlab.CombinationTreatment class method) (wetlab.CompoundTreatment class method) (wetlab.EnvironmentalTreatment class method) (wetlab.Experiment class method) (wetlab.GeneticTreatment class method) (wetlab.Techsample class method) (wetlab.TreatmentTarget class method) (wetlab.Well class method) fs (lamindb.UPath property)

G

gap_days (omop.DrugEra attribute) gender (clinicore.Patient attribute) GENDER_CHOICES (clinicore.Patient attribute) gender_concept (omop.Person attribute) (omop.Provider attribute) gender_source_concept (omop.Person attribute) (omop.Provider attribute) gender_source_value (omop.Person attribute) (omop.Provider attribute) Gene (class in bionty) (class in bionty.base) gene_symbol (bionty.CellMarker attribute) (bionty.Protein attribute) genes (bionty.Pathway attribute) (wetlab.TreatmentTarget attribute) genetics (wetlab.CombinationTreatment attribute) GeneticTreatment (class in wetlab) get() (bionty.base.Ontology method) (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Source class method) (bionty.Tissue class method) (cellregistry.Cell class method) (clinicore.Biosample class method) (clinicore.ClinicalTrial class method) (clinicore.Medication class method) (clinicore.Patient class method) (clinicore.Treatment class method) (findrefs.Reference class method) (lamindb.Artifact class method) (lamindb.Collection class method) (lamindb.core.FeatureManager class method) (lamindb.core.FeatureValue class method) (lamindb.core.LabelManager method) (lamindb.core.ParamValue class method) (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) (lamindb.core.Record class method) (lamindb.core.Registry method) (lamindb.Feature class method) (lamindb.FeatureSet class method) (lamindb.Param class method) (lamindb.Run class method) (lamindb.Storage class method) (lamindb.Transform class method) (lamindb.ULabel class method) (lamindb.User class method) (omop.CareSite class method) (omop.CdmSource class method) (omop.Cohort class method) (omop.CohortDefinition class method) (omop.Concept class method) (omop.ConceptAncestor class method) (omop.ConceptRelationship class method) (omop.ConceptSynonym class method) (omop.ConditionEra class method) (omop.ConditionOccurrence class method) (omop.Cost class method) (omop.Death class method) (omop.DeviceExposure class method) (omop.Domain class method) (omop.DoseEra class method) (omop.DrugEra class method) (omop.DrugExposure class method) (omop.DrugStrength class method) (omop.Episode class method) (omop.EpisodeEvent class method) (omop.FactRelationship class method) (omop.Location class method) (omop.Measurement class method) (omop.Metadata class method) (omop.Note class method) (omop.NoteNlp class method) (omop.Observation class method) (omop.ObservationPeriod class method) (omop.PayerPlanPeriod class method) (omop.Person class method) (omop.ProcedureOccurrence class method) (omop.Provider class method) (omop.Relationship class method) (omop.SourceToConceptMap class method) (omop.Specimen class method) (omop.VisitDetail class method) (omop.VisitOccurrence class method) (omop.Vocabulary class method) (ourprojects.Reference class method) (wetlab.Biosample class method) (wetlab.CombinationTreatment class method) (wetlab.CompoundTreatment class method) (wetlab.EnvironmentalTreatment class method) (wetlab.Experiment class method) (wetlab.GeneticTreatment class method) (wetlab.Techsample class method) (wetlab.TreatmentTarget class method) (wetlab.Well class method) get_constraints() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Source method) (bionty.Tissue method) (cellregistry.Cell method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (findrefs.Reference method) (lamindb.Artifact method) (lamindb.Collection method) (lamindb.core.FeatureValue method) (lamindb.core.IsVersioned method) (lamindb.core.ParamValue method) (lamindb.core.Record method) (lamindb.core.TracksRun method) (lamindb.core.TracksUpdates method) (lamindb.Feature method) (lamindb.FeatureSet method) (lamindb.Param method) (lamindb.Run method) (lamindb.Storage method) (lamindb.Transform method) (lamindb.ULabel method) (lamindb.User method) (omop.CareSite method) (omop.CdmSource method) (omop.Cohort method) (omop.CohortDefinition method) (omop.Concept method) (omop.ConceptAncestor method) (omop.ConceptRelationship method) (omop.ConceptSynonym method) (omop.ConditionEra method) (omop.ConditionOccurrence method) (omop.Cost method) (omop.Death method) (omop.DeviceExposure method) (omop.Domain method) (omop.DoseEra method) (omop.DrugEra method) (omop.DrugExposure method) (omop.DrugStrength method) (omop.Episode method) (omop.EpisodeEvent method) (omop.FactRelationship method) (omop.Location method) (omop.Measurement method) (omop.Metadata method) (omop.Note method) (omop.NoteNlp method) (omop.Observation method) (omop.ObservationPeriod method) (omop.PayerPlanPeriod method) (omop.Person method) (omop.ProcedureOccurrence method) (omop.Provider method) (omop.Relationship method) (omop.SourceToConceptMap method) (omop.Specimen method) (omop.VisitDetail method) (omop.VisitOccurrence method) (omop.Vocabulary method) (ourprojects.Reference method) (wetlab.Biosample method) (wetlab.CombinationTreatment method) (wetlab.CompoundTreatment method) (wetlab.EnvironmentalTreatment method) (wetlab.Experiment method) (wetlab.GeneticTreatment method) (wetlab.Techsample method) (wetlab.TreatmentTarget method) (wetlab.Well method)

get_deferred_fields() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Source method) (bionty.Tissue method) (cellregistry.Cell method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (findrefs.Reference method) (lamindb.Artifact method) (lamindb.Collection method) (lamindb.core.FeatureValue method) (lamindb.core.IsVersioned method) (lamindb.core.ParamValue method) (lamindb.core.Record method) (lamindb.core.TracksRun method) (lamindb.core.TracksUpdates method) (lamindb.Feature method) (lamindb.FeatureSet method) (lamindb.Param method) (lamindb.Run method) (lamindb.Storage method) (lamindb.Transform method) (lamindb.ULabel method) (lamindb.User method) (omop.CareSite method) (omop.CdmSource method) (omop.Cohort method) (omop.CohortDefinition method) (omop.Concept method) (omop.ConceptAncestor method) (omop.ConceptRelationship method) (omop.ConceptSynonym method) (omop.ConditionEra method) (omop.ConditionOccurrence method) (omop.Cost method) (omop.Death method) (omop.DeviceExposure method) (omop.Domain method) (omop.DoseEra method) (omop.DrugEra method) (omop.DrugExposure method) (omop.DrugStrength method) (omop.Episode method) (omop.EpisodeEvent method) (omop.FactRelationship method) (omop.Location method) (omop.Measurement method) (omop.Metadata method) (omop.Note method) (omop.NoteNlp method) (omop.Observation method) (omop.ObservationPeriod method) (omop.PayerPlanPeriod method) (omop.Person method) (omop.ProcedureOccurrence method) (omop.Provider method) (omop.Relationship method) (omop.SourceToConceptMap method) (omop.Specimen method) (omop.VisitDetail method) (omop.VisitOccurrence method) (omop.Vocabulary method) (ourprojects.Reference method) (wetlab.Biosample method) (wetlab.CombinationTreatment method) (wetlab.CompoundTreatment method) (wetlab.EnvironmentalTreatment method) (wetlab.Experiment method) (wetlab.GeneticTreatment method) (wetlab.Techsample method) (wetlab.TreatmentTarget method) (wetlab.Well method) get_gender_display() (clinicore.Patient method) get_label_weights() (lamindb.core.MappedCollection method) get_merged_categories() (lamindb.core.MappedCollection method) get_merged_labels() (lamindb.core.MappedCollection method) get_or_create() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) get_queryset() (lamindb.core.QueryManager method) get_relationship() (bionty.base.Ontology method) get_status_display() (clinicore.Treatment method) get_synonym_type() (bionty.base.Ontology method) get_term() (bionty.base.Ontology method) get_values() (lamindb.core.FeatureManager method) (lamindb.core.ParamManager method) git_repo (lamindb.setup.core.InstanceSettings property) glob() (lamindb.UPath method) group() (lamindb.UPath method)

H

handle (lamindb.setup.core.UserSettings attribute) (lamindb.User attribute) hardlink_to() (lamindb.UPath method) hash (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.FeatureSet attribute) (lamindb.Transform attribute)

HasParents (class in lamindb.core) home() (lamindb.UPath class method)

I

id (lamindb.setup.core.StorageSettings property) (lamindb.setup.core.UserSettings property) import_from_source() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (clinicore.Medication class method) in_bulk() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) in_db (bionty.Source attribute) index() (lamindb.core.RecordsList method) ingredient_concept (omop.DrugStrength attribute) init() (in module lamindb.setup) input_artifacts (lamindb.Run attribute) input_collections (lamindb.Run attribute) input_of_runs (lamindb.Artifact attribute) (lamindb.Collection attribute) insert() (lamindb.core.RecordsList method) inspect() (bionty.base.BFXPipeline method) (bionty.base.BioSample method) (bionty.base.CellLine method) (bionty.base.CellMarker method) (bionty.base.CellType method) (bionty.base.DevelopmentalStage method) (bionty.base.Disease method) (bionty.base.Drug method) (bionty.base.Ethnicity method) (bionty.base.ExperimentalFactor method) (bionty.base.Gene method) (bionty.base.Organism method) (bionty.base.Pathway method) (bionty.base.Phenotype method) (bionty.base.Protein method) (bionty.base.PublicOntology method) (bionty.base.Tissue method) (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.core.StaticReference method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (cellregistry.Cell class method) (clinicore.Biosample class method) (clinicore.ClinicalTrial class method) (clinicore.Medication class method) (clinicore.Patient class method) (clinicore.Treatment class method) (findrefs.Reference class method) (lamindb.core.CanValidate class method) (lamindb.core.QuerySet method) (lamindb.Feature class method) (lamindb.Param class method) (lamindb.ULabel class method) (lamindb.User class method) (omop.CareSite class method) (omop.CdmSource class method) (omop.Cohort class method) (omop.CohortDefinition class method) (omop.Concept class method) (omop.ConceptAncestor class method) (omop.ConceptRelationship class method) (omop.ConceptSynonym class method) (omop.ConditionEra class method) (omop.ConditionOccurrence class method) (omop.Cost class method) (omop.Death class method) (omop.DeviceExposure class method) (omop.Domain class method) (omop.DoseEra class method) (omop.DrugEra class method) (omop.DrugExposure class method) (omop.DrugStrength class method) (omop.Episode class method) (omop.EpisodeEvent class method) (omop.FactRelationship class method) (omop.Location class method) (omop.Measurement class method) (omop.Metadata class method) (omop.Note class method) (omop.NoteNlp class method) (omop.Observation class method) (omop.ObservationPeriod class method) (omop.PayerPlanPeriod class method) (omop.Person class method) (omop.ProcedureOccurrence class method) (omop.Provider class method) (omop.Relationship class method) (omop.SourceToConceptMap class method) (omop.Specimen class method) (omop.VisitDetail class method) (omop.VisitOccurrence class method) (omop.Vocabulary class method) (ourprojects.Reference class method) (wetlab.Biosample class method) (wetlab.CombinationTreatment class method) (wetlab.CompoundTreatment class method) (wetlab.EnvironmentalTreatment class method) (wetlab.Experiment class method) (wetlab.GeneticTreatment class method) (wetlab.Techsample class method) (wetlab.TreatmentTarget class method) (wetlab.Well class method)

InspectResult (class in lamindb.core) instance (lamindb.setup.core.SetupSettings property) instance_uid (lamindb.Storage attribute) InstanceSettings (class in lamindb.setup.core) instrument (bionty.ExperimentalFactor attribute) IntegrityError intersection() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) invalid_reason (omop.Concept attribute) (omop.ConceptRelationship attribute) (omop.DrugStrength attribute) (omop.SourceToConceptMap attribute) InvalidArgument is_absolute() (lamindb.UPath method) is_block_device() (lamindb.UPath method) is_char_device() (lamindb.UPath method) is_consecutive (lamindb.Run attribute) is_dir() (lamindb.UPath method) is_fifo() (lamindb.UPath method) is_file() (lamindb.UPath method) is_hierarchical (omop.Relationship attribute) is_junction() (lamindb.UPath method) is_latest (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.Transform attribute) is_mount() (lamindb.UPath method) is_on_hub (lamindb.setup.core.InstanceSettings property) (lamindb.setup.core.StorageSettings property) is_relative_to() (lamindb.UPath method) is_remote (lamindb.setup.core.InstanceSettings property) is_reserved() (lamindb.UPath method) is_socket() (lamindb.UPath method) is_symlink() (lamindb.UPath method) IsVersioned (class in lamindb.core) items() (bionty.base.Ontology method) iterator() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) iterdir() (lamindb.UPath method)

J

joinpath() (lamindb.UPath method)

joinuri() (lamindb.UPath method)

K

keep_artifacts_local (lamindb.setup.core.InstanceSettings property) key (lamindb.Artifact attribute) (lamindb.Transform attribute)

key_to_filepath() (lamindb.setup.core.StorageSettings method) keys() (bionty.base.Ontology method)

L

LabelManager (class in lamindb.core) labels (lamindb.Artifact property) lamindb module lamindb.core module lamindb.core.datasets module lamindb.core.exceptions module lamindb.core.fields module lamindb.core.loaders module lamindb.core.storage module lamindb.core.subsettings module lamindb.core.types module lamindb.integrations module lamindb.setup module lamindb.setup.core module language_concept (omop.ConceptSynonym attribute) (omop.Note attribute) last() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) latest() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) latest_run (lamindb.Transform property) latest_version() (lamindb.core.QuerySet method) latitude (omop.Location attribute) lchmod() (lamindb.UPath method) length (bionty.Protein attribute) lexical_variant (omop.NoteNlp attribute) link_to() (lamindb.UPath method) list() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) ListLike (in module lamindb.core.types) load() (lamindb.Artifact method) (lamindb.Collection method) load_fcs() (in module lamindb.core.loaders) load_h5ad() (in module lamindb.core.loaders) load_h5mu() (in module lamindb.core.loaders) load_html() (in module lamindb.core.loaders) load_image() (in module lamindb.core.loaders) load_json() (in module lamindb.core.loaders) load_svg() (in module lamindb.core.loaders) load_tsv() (in module lamindb.core.loaders) local_filepath() (lamindb.setup.core.StorageSettings method) Location (class in omop) location (omop.CareSite attribute) (omop.Person attribute) location_id (omop.Location attribute) location_source_value (omop.Location attribute) logger (in module lamindb.core) login() (in module lamindb.setup) logout() (in module lamindb.setup) longitude (omop.Location attribute) lookup() (bionty.base.BFXPipeline method) (bionty.base.BioSample method) (bionty.base.CellLine method) (bionty.base.CellMarker method) (bionty.base.CellType method) (bionty.base.DevelopmentalStage method) (bionty.base.Disease method) (bionty.base.Drug method) (bionty.base.Ethnicity method) (bionty.base.ExperimentalFactor method) (bionty.base.Gene method) (bionty.base.Organism method) (bionty.base.Pathway method) (bionty.base.Phenotype method) (bionty.base.Protein method) (bionty.base.PublicOntology method) (bionty.base.Tissue method) (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.core.StaticReference method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Source class method) (bionty.Tissue class method) (cellregistry.Cell class method) (clinicore.Biosample class method) (clinicore.ClinicalTrial class method) (clinicore.Medication class method) (clinicore.Patient class method) (clinicore.Treatment class method) (findrefs.Reference class method) (lamindb.Artifact class method) (lamindb.Collection class method) (lamindb.core.AnnDataCurator method) (lamindb.core.DataFrameCurator method) (lamindb.core.FeatureValue class method) (lamindb.core.MuDataCurator method) (lamindb.core.ParamValue class method) (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) (lamindb.core.Record class method) (lamindb.core.Registry method) (lamindb.Feature class method) (lamindb.FeatureSet class method) (lamindb.Param class method) (lamindb.Run class method) (lamindb.Storage class method) (lamindb.Transform class method) (lamindb.ULabel class method) (lamindb.User class method) (omop.CareSite class method) (omop.CdmSource class method) (omop.Cohort class method) (omop.CohortDefinition class method) (omop.Concept class method) (omop.ConceptAncestor class method) (omop.ConceptRelationship class method) (omop.ConceptSynonym class method) (omop.ConditionEra class method) (omop.ConditionOccurrence class method) (omop.Cost class method) (omop.Death class method) (omop.DeviceExposure class method) (omop.Domain class method) (omop.DoseEra class method) (omop.DrugEra class method) (omop.DrugExposure class method) (omop.DrugStrength class method) (omop.Episode class method) (omop.EpisodeEvent class method) (omop.FactRelationship class method) (omop.Location class method) (omop.Measurement class method) (omop.Metadata class method) (omop.Note class method) (omop.NoteNlp class method) (omop.Observation class method) (omop.ObservationPeriod class method) (omop.PayerPlanPeriod class method) (omop.Person class method) (omop.ProcedureOccurrence class method) (omop.Provider class method) (omop.Relationship class method) (omop.SourceToConceptMap class method) (omop.Specimen class method) (omop.VisitDetail class method) (omop.VisitOccurrence class method) (omop.Vocabulary class method) (ourprojects.Reference class method) (wetlab.Biosample class method) (wetlab.CombinationTreatment class method) (wetlab.CompoundTreatment class method) (wetlab.EnvironmentalTreatment class method) (wetlab.Experiment class method) (wetlab.GeneticTreatment class method) (wetlab.Techsample class method) (wetlab.TreatmentTarget class method) (wetlab.Well class method)

lot_number (omop.DrugExposure attribute) lstat() (lamindb.UPath method)

M

make_external() (lamindb.core.FeatureManager method) (lamindb.core.LabelManager method) map_legacy_ids() (bionty.base.Gene method) map_synonyms() (bionty.base.BFXPipeline method) (bionty.base.BioSample method) (bionty.base.CellLine method) (bionty.base.CellMarker method) (bionty.base.CellType method) (bionty.base.DevelopmentalStage method) (bionty.base.Disease method) (bionty.base.Drug method) (bionty.base.Ethnicity method) (bionty.base.ExperimentalFactor method) (bionty.base.Gene method) (bionty.base.Organism method) (bionty.base.Pathway method) (bionty.base.Phenotype method) (bionty.base.Protein method) (bionty.base.PublicOntology method) (bionty.base.Tissue method) (bionty.core.StaticReference method) mapped() (lamindb.Collection method) MappedCollection (class in lamindb.core) match() (lamindb.UPath method) max_levels_of_separation (omop.ConceptAncestor attribute) md5 (bionty.Source attribute) meas_event_field_concept (omop.Measurement attribute) measured_in (cellregistry.Cell attribute) measurement (bionty.ExperimentalFactor attribute) Measurement (class in omop) measurement_concept (omop.Measurement attribute) measurement_date (omop.Measurement attribute) measurement_datetime (omop.Measurement attribute) measurement_event_id (omop.Measurement attribute) measurement_id (omop.Measurement attribute) measurement_source_concept (omop.Measurement attribute) measurement_source_value (omop.Measurement attribute) measurement_time (omop.Measurement attribute) measurement_type_concept (omop.Measurement attribute) Medication (class in clinicore) medication (clinicore.Treatment attribute) medications (clinicore.Biosample attribute) members (lamindb.FeatureSet property) (wetlab.CombinationTreatment property)

Meta (lamindb.core.IsVersioned attribute) (lamindb.core.TracksRun attribute) (lamindb.core.TracksUpdates attribute) meta_artifact (lamindb.Collection attribute) Metadata (class in omop) metadata_concept (omop.Metadata attribute) metadata_date (omop.Metadata attribute) metadata_datetime (omop.Metadata attribute) metadata_id (omop.Metadata attribute) metadata_type_concept (omop.Metadata attribute) migrate (class in lamindb.setup) min_levels_of_separation (omop.ConceptAncestor attribute) MissingContextUID mkdir() (lamindb.UPath method) modified (lamindb.UPath property) modifier_concept (omop.ProcedureOccurrence attribute) modifier_source_value (omop.ProcedureOccurrence attribute) module bionty bionty.base bionty.core cellregistry clinicore findrefs lamindb lamindb.core lamindb.core.datasets lamindb.core.exceptions lamindb.core.fields lamindb.core.loaders lamindb.core.storage lamindb.core.subsettings lamindb.core.types lamindb.integrations lamindb.setup lamindb.setup.core omop ourprojects wetlab molecule (bionty.ExperimentalFactor attribute) month_of_birth (omop.Person attribute) mudata_papalexi21_subset() (in module lamindb.core.datasets) MuDataCurator (class in lamindb.core)

N

n (lamindb.FeatureSet attribute) n_empty (lamindb.core.InspectResult property) n_objects (lamindb.Artifact attribute) n_observations (lamindb.Artifact attribute) n_unique (lamindb.core.InspectResult property) name (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) (cellregistry.Cell attribute) (clinicore.Biosample attribute) (clinicore.ClinicalTrial attribute) (clinicore.Medication attribute) (clinicore.Patient attribute) (clinicore.Treatment attribute) (findrefs.Reference attribute) (lamindb.Collection attribute) (lamindb.core.Context property) (lamindb.core.subsettings.TransformSettings attribute) (lamindb.Feature attribute) (lamindb.FeatureSet attribute) (lamindb.Param attribute) (lamindb.setup.core.InstanceSettings property) (lamindb.setup.core.UserSettings attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) (lamindb.UPath property) (lamindb.User attribute) (omop.Metadata attribute) (ourprojects.Reference attribute) (wetlab.Biosample attribute) (wetlab.CombinationTreatment attribute) (wetlab.CompoundTreatment attribute) (wetlab.EnvironmentalTreatment attribute) (wetlab.Experiment attribute) (wetlab.GeneticTreatment attribute) (wetlab.Techsample attribute) (wetlab.TreatmentTarget attribute) (wetlab.Well attribute)

ncbi_gene_id (bionty.CellMarker attribute) ncbi_gene_ids (bionty.Gene attribute) nlp_date (omop.NoteNlp attribute) nlp_datetime (omop.NoteNlp attribute) nlp_system (omop.NoteNlp attribute) non_validated (lamindb.core.AnnDataCurator property) (lamindb.core.DataFrameCurator property) (lamindb.core.InspectResult property) none() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) Note (class in omop) note_class_concept (omop.Note attribute) note_date (omop.Note attribute) note_datetime (omop.Note attribute) note_event_field_concept (omop.Note attribute) note_event_id (omop.Note attribute) note_id (omop.Note attribute) (omop.NoteNlp attribute) note_nlp_concept (omop.NoteNlp attribute) note_nlp_id (omop.NoteNlp attribute) note_nlp_source_concept (omop.NoteNlp attribute) note_source_value (omop.Note attribute) note_text (omop.Note attribute) note_title (omop.Note attribute) note_type_concept (omop.Note attribute) NotebookNotSaved NoteNlp (class in omop) NoTitleError npi (omop.Provider attribute) numerator_unit_concept (omop.DrugStrength attribute) numerator_value (omop.DrugStrength attribute)

O

objective (clinicore.ClinicalTrial attribute) obs_event_field_concept (omop.Observation attribute) obs_names (lamindb.core.storage.AnnDataAccessor property) Observation (class in omop) observation_concept (omop.Observation attribute) observation_date (omop.Observation attribute) observation_datetime (omop.Observation attribute) observation_event_id (omop.Observation attribute) observation_id (omop.Observation attribute) observation_period_end_date (omop.ObservationPeriod attribute) observation_period_id (omop.ObservationPeriod attribute) observation_period_start_date (omop.ObservationPeriod attribute) observation_source_concept (omop.Observation attribute) observation_source_value (omop.Observation attribute) observation_type_concept (omop.Observation attribute) ObservationPeriod (class in omop) off_target_score (wetlab.GeneticTreatment attribute) offset (omop.NoteNlp attribute) omop module on_target_score (wetlab.GeneticTreatment attribute) one() (lamindb.core.QuerySet method) (lamindb.core.RecordsList method) one_or_none() (lamindb.core.QuerySet method) only() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) Ontology (class in bionty.base) ontology_id (bionty.CellLine attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Tissue attribute) (clinicore.Medication attribute) (wetlab.CombinationTreatment attribute) (wetlab.EnvironmentalTreatment attribute) open() (lamindb.Artifact method) (lamindb.UPath method)

operator_concept (omop.Measurement attribute) order_by() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) ordered (lamindb.core.QuerySet property) ordered_artifacts (lamindb.Collection property) organism (bionty.base.BFXPipeline property) (bionty.base.BioSample property) (bionty.base.CellLine property) (bionty.base.CellMarker property) (bionty.base.CellType property) (bionty.base.DevelopmentalStage property) (bionty.base.Disease property) (bionty.base.Drug property) (bionty.base.Ethnicity property) (bionty.base.ExperimentalFactor property) (bionty.base.Gene property) (bionty.base.Organism property) (bionty.base.Pathway property) (bionty.base.Phenotype property) (bionty.base.Protein property) (bionty.base.PublicOntology property) (bionty.base.Tissue property) (bionty.CellMarker attribute) (bionty.core.Settings property) (bionty.core.StaticReference property) (bionty.Gene attribute) (bionty.Protein attribute) (bionty.Source attribute) Organism (class in bionty) (class in bionty.base) organism (wetlab.Biosample attribute) original_shapes (lamindb.core.MappedCollection property) ourprojects module output_artifacts (lamindb.Run attribute) (lamindb.Transform attribute) output_collections (lamindb.Run attribute) (lamindb.Transform attribute) owner (lamindb.setup.core.InstanceSettings property) owner() (lamindb.UPath method)

P

paid_by_patient (omop.Cost attribute) paid_by_payer (omop.Cost attribute) paid_by_primary (omop.Cost attribute) paid_dispensing_fee (omop.Cost attribute) paid_ingredient_cost (omop.Cost attribute) paid_patient_coinsurance (omop.Cost attribute) paid_patient_copay (omop.Cost attribute) paid_patient_deductible (omop.Cost attribute) Param (class in lamindb) param (lamindb.core.ParamValue attribute) ParamManager (class in lamindb.core) params (lamindb.Artifact attribute) (lamindb.Run attribute) ParamValue (class in lamindb.core) parent (lamindb.Run attribute) (lamindb.UPath property) parent_visit_detail (omop.VisitDetail attribute) parents (bionty.CellLine attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Tissue attribute) (clinicore.Medication attribute) (lamindb.ULabel attribute) (lamindb.UPath property) parts (lamindb.UPath property) password (lamindb.setup.core.UserSettings attribute) path (lamindb.Artifact property) (lamindb.Storage property) (lamindb.UPath property) paths (lamindb.setup.core.SetupSettings property) Pathway (class in bionty) (class in bionty.base) pathways (wetlab.TreatmentTarget attribute) Patient (class in clinicore) patient (clinicore.Biosample attribute) payer_concept (omop.PayerPlanPeriod attribute) payer_plan_period_end_date (omop.PayerPlanPeriod attribute) payer_plan_period_id (omop.Cost attribute) (omop.PayerPlanPeriod attribute) payer_plan_period_start_date (omop.PayerPlanPeriod attribute) payer_source_concept (omop.PayerPlanPeriod attribute) payer_source_value (omop.PayerPlanPeriod attribute) PayerPlanPeriod (class in omop) period_type_concept (omop.ObservationPeriod attribute) Person (class in omop) person (omop.ConditionEra attribute) (omop.ConditionOccurrence attribute) (omop.Death attribute) (omop.DeviceExposure attribute) (omop.DoseEra attribute) (omop.DrugEra attribute) (omop.DrugExposure attribute) (omop.Episode attribute) (omop.Measurement attribute) (omop.Note attribute) (omop.Observation attribute) (omop.ObservationPeriod attribute) (omop.PayerPlanPeriod attribute) (omop.ProcedureOccurrence attribute) (omop.Specimen attribute) (omop.VisitDetail attribute) (omop.VisitOccurrence attribute) person_id (omop.Person attribute) person_source_value (omop.Person attribute) Phenotype (class in bionty) (class in bionty.base) pk (lamindb.core.IsVersioned property) (lamindb.core.TracksRun property) (lamindb.core.TracksUpdates property) place_of_service_concept (omop.CareSite attribute) place_of_service_source_value (omop.CareSite attribute) plan_concept (omop.PayerPlanPeriod attribute) plan_source_concept (omop.PayerPlanPeriod attribute) plan_source_value (omop.PayerPlanPeriod attribute) pop() (lamindb.core.RecordsList method) preceding_visit_detail (omop.VisitDetail attribute) preceding_visit_occurrence (omop.VisitOccurrence attribute) predecessors (lamindb.Transform attribute) prefetch_related() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) prepare_database_save() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Source method) (bionty.Tissue method) (cellregistry.Cell method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (findrefs.Reference method) (lamindb.Artifact method) (lamindb.Collection method) (lamindb.core.FeatureValue method) (lamindb.core.IsVersioned method) (lamindb.core.ParamValue method) (lamindb.core.Record method) (lamindb.core.TracksRun method) (lamindb.core.TracksUpdates method) (lamindb.Feature method) (lamindb.FeatureSet method) (lamindb.Param method) (lamindb.Run method) (lamindb.Storage method) (lamindb.Transform method) (lamindb.ULabel method) (lamindb.User method) (omop.CareSite method) (omop.CdmSource method) (omop.Cohort method) (omop.CohortDefinition method) (omop.Concept method) (omop.ConceptAncestor method) (omop.ConceptRelationship method) (omop.ConceptSynonym method) (omop.ConditionEra method) (omop.ConditionOccurrence method) (omop.Cost method) (omop.Death method) (omop.DeviceExposure method) (omop.Domain method) (omop.DoseEra method) (omop.DrugEra method) (omop.DrugExposure method) (omop.DrugStrength method) (omop.Episode method) (omop.EpisodeEvent method) (omop.FactRelationship method) (omop.Location method) (omop.Measurement method) (omop.Metadata method) (omop.Note method) (omop.NoteNlp method) (omop.Observation method) (omop.ObservationPeriod method) (omop.PayerPlanPeriod method) (omop.Person method) (omop.ProcedureOccurrence method) (omop.Provider method) (omop.Relationship method) (omop.SourceToConceptMap method) (omop.Specimen method) (omop.VisitDetail method) (omop.VisitOccurrence method) (omop.Vocabulary method) (ourprojects.Reference method) (wetlab.Biosample method) (wetlab.CombinationTreatment method) (wetlab.CompoundTreatment method) (wetlab.EnvironmentalTreatment method) (wetlab.Experiment method) (wetlab.GeneticTreatment method) (wetlab.Techsample method) (wetlab.TreatmentTarget method) (wetlab.Well method)

private_django_api (lamindb.setup.core.SetupSettings property) procedure_concept (omop.ProcedureOccurrence attribute) procedure_date (omop.ProcedureOccurrence attribute) procedure_datetime (omop.ProcedureOccurrence attribute) procedure_end_date (omop.ProcedureOccurrence attribute) procedure_end_datetime (omop.ProcedureOccurrence attribute) procedure_occurrence_id (omop.ProcedureOccurrence attribute) procedure_source_concept (omop.ProcedureOccurrence attribute) procedure_source_value (omop.ProcedureOccurrence attribute) procedure_type_concept (omop.ProcedureOccurrence attribute) ProcedureOccurrence (class in omop) production_id (omop.DeviceExposure attribute) Protein (class in bionty) (class in bionty.base) proteins (wetlab.TreatmentTarget attribute) protocol (lamindb.UPath property) Provider (class in omop) provider (omop.ConditionOccurrence attribute) (omop.DeviceExposure attribute) (omop.DrugExposure attribute) (omop.Measurement attribute) (omop.Note attribute) (omop.Observation attribute) (omop.Person attribute) (omop.ProcedureOccurrence attribute) (omop.VisitDetail attribute) (omop.VisitOccurrence attribute) provider_id (omop.Provider attribute) provider_name (omop.Provider attribute) provider_source_value (omop.Provider attribute) public() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (clinicore.Medication class method) PublicOntology (class in bionty.base) PublicOntologyField (class in bionty.base) pubmed_id (findrefs.Reference attribute) (ourprojects.Reference attribute)

Q

qualifier_concept (omop.Observation attribute) qualifier_source_value (omop.Observation attribute) quantity (omop.DeviceExposure attribute) (omop.DrugExposure attribute) (omop.ProcedureOccurrence attribute) (omop.Specimen attribute)

query (lamindb.core.QuerySet property) QueryManager (class in lamindb.core) QuerySet (class in lamindb.core)

R

race_concept (omop.Person attribute) race_source_concept (omop.Person attribute) race_source_value (omop.Person attribute) range_high (omop.Measurement attribute) range_low (omop.Measurement attribute) raw() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) read_bytes() (lamindb.UPath method) read_text() (lamindb.UPath method) readlink() (lamindb.UPath method) Record (class in lamindb.core) record (lamindb.setup.core.StorageSettings property) RecordNameChangeIntegrityError RecordsList (class in lamindb.core) Reference (class in findrefs) (class in ourprojects) reference (lamindb.Collection attribute) (lamindb.Run attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) reference_type (lamindb.Collection attribute) (lamindb.Run attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) refills (omop.DrugExposure attribute) refresh_from_db() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Source method) (bionty.Tissue method) (cellregistry.Cell method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (findrefs.Reference method) (lamindb.Artifact method) (lamindb.Collection method) (lamindb.core.FeatureValue method) (lamindb.core.IsVersioned method) (lamindb.core.ParamValue method) (lamindb.core.Record method) (lamindb.core.TracksRun method) (lamindb.core.TracksUpdates method) (lamindb.Feature method) (lamindb.FeatureSet method) (lamindb.Param method) (lamindb.Run method) (lamindb.Storage method) (lamindb.Transform method) (lamindb.ULabel method) (lamindb.User method) (omop.CareSite method) (omop.CdmSource method) (omop.Cohort method) (omop.CohortDefinition method) (omop.Concept method) (omop.ConceptAncestor method) (omop.ConceptRelationship method) (omop.ConceptSynonym method) (omop.ConditionEra method) (omop.ConditionOccurrence method) (omop.Cost method) (omop.Death method) (omop.DeviceExposure method) (omop.Domain method) (omop.DoseEra method) (omop.DrugEra method) (omop.DrugExposure method) (omop.DrugStrength method) (omop.Episode method) (omop.EpisodeEvent method) (omop.FactRelationship method) (omop.Location method) (omop.Measurement method) (omop.Metadata method) (omop.Note method) (omop.NoteNlp method) (omop.Observation method) (omop.ObservationPeriod method) (omop.PayerPlanPeriod method) (omop.Person method) (omop.ProcedureOccurrence method) (omop.Provider method) (omop.Relationship method) (omop.SourceToConceptMap method) (omop.Specimen method) (omop.VisitDetail method) (omop.VisitOccurrence method) (omop.Vocabulary method) (ourprojects.Reference method) (wetlab.Biosample method) (wetlab.CombinationTreatment method) (wetlab.CompoundTreatment method) (wetlab.EnvironmentalTreatment method) (wetlab.Experiment method) (wetlab.GeneticTreatment method) (wetlab.Techsample method) (wetlab.TreatmentTarget method) (wetlab.Well method) region (lamindb.setup.core.StorageSettings property) (lamindb.Storage attribute) Registry (class in lamindb.core) registry (lamindb.FeatureSet attribute) Relationship (class in omop) relationship (omop.ConceptRelationship attribute) relationship_concept (omop.FactRelationship attribute) (omop.Relationship attribute) relationship_id (omop.Relationship attribute) relationship_name (omop.Relationship attribute) relationships() (bionty.base.Ontology method) relative_to() (lamindb.UPath method) remove() (lamindb.core.RecordsList method) remove_synonym() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Tissue method) (cellregistry.Cell method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (findrefs.Reference method) (lamindb.core.CanValidate method) (lamindb.Feature method) (lamindb.Param method) (lamindb.ULabel method) (lamindb.User method) (omop.CareSite method) (omop.CdmSource method) (omop.Cohort method) (omop.CohortDefinition method) (omop.Concept method) (omop.ConceptAncestor method) (omop.ConceptRelationship method) (omop.ConceptSynonym method) (omop.ConditionEra method) (omop.ConditionOccurrence method) (omop.Cost method) (omop.Death method) (omop.DeviceExposure method) (omop.Domain method) (omop.DoseEra method) (omop.DrugEra method) (omop.DrugExposure method) (omop.DrugStrength method) (omop.Episode method) (omop.EpisodeEvent method) (omop.FactRelationship method) (omop.Location method) (omop.Measurement method) (omop.Metadata method) (omop.Note method) (omop.NoteNlp method) (omop.Observation method) (omop.ObservationPeriod method) (omop.PayerPlanPeriod method) (omop.Person method) (omop.ProcedureOccurrence method) (omop.Provider method) (omop.Relationship method) (omop.SourceToConceptMap method) (omop.Specimen method) (omop.VisitDetail method) (omop.VisitOccurrence method) (omop.Vocabulary method) (ourprojects.Reference method) (wetlab.Biosample method) (wetlab.CombinationTreatment method) (wetlab.CompoundTreatment method) (wetlab.EnvironmentalTreatment method) (wetlab.Experiment method) (wetlab.GeneticTreatment method) (wetlab.Techsample method) (wetlab.TreatmentTarget method) (wetlab.Well method)

rename() (lamindb.UPath method) replace() (lamindb.Artifact method) (lamindb.UPath method) report (lamindb.Run attribute) reset_sources() (in module bionty.base) resolve() (lamindb.UPath method) resolve_expression() (lamindb.core.QuerySet method) restore() (lamindb.Artifact method) (lamindb.Collection method) revenue_code_concept (omop.Cost attribute) revenue_code_source_value (omop.Cost attribute) reverse() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) (lamindb.core.RecordsList method) reverse_relationship_id (omop.Relationship attribute) rglob() (lamindb.UPath method) rmdir() (lamindb.UPath method) root (lamindb.setup.core.StorageSettings property) (lamindb.Storage attribute) (lamindb.UPath property) root_as_str (lamindb.setup.core.StorageSettings property) route (clinicore.Treatment attribute) route_concept (omop.DrugExposure attribute) route_source_value (omop.DrugExposure attribute) row (wetlab.Well attribute) run (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) (cellregistry.Cell attribute) Run (class in lamindb) run (clinicore.Biosample attribute) (clinicore.ClinicalTrial attribute) (clinicore.Medication attribute) (clinicore.Patient attribute) (clinicore.Treatment attribute) (findrefs.Reference attribute) (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.core.Context property) (lamindb.core.FeatureValue attribute) (lamindb.core.TracksRun attribute) (lamindb.Feature attribute) (lamindb.FeatureSet attribute) (lamindb.Param attribute) (lamindb.Storage attribute) (lamindb.ULabel attribute) (ourprojects.Reference attribute) (wetlab.Biosample attribute) (wetlab.CombinationTreatment attribute) (wetlab.CompoundTreatment attribute) (wetlab.EnvironmentalTreatment attribute) (wetlab.Experiment attribute) (wetlab.GeneticTreatment attribute) (wetlab.Techsample attribute) (wetlab.TreatmentTarget attribute) (wetlab.Well attribute) run_id (lamindb.core.TracksRun attribute) runs (lamindb.core.ParamValue attribute) (lamindb.Transform attribute)

S

samefile() (lamindb.UPath method) save() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Source method) (bionty.Tissue method) (cellregistry.Cell method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (findrefs.Reference method) (in module lamindb) (lamindb.Artifact method) (lamindb.Collection method) (lamindb.core.FeatureValue method) (lamindb.core.IsVersioned method) (lamindb.core.ParamValue method) (lamindb.core.Record method) (lamindb.core.TracksRun method) (lamindb.core.TracksUpdates method) (lamindb.Feature method) (lamindb.FeatureSet method) (lamindb.Param method) (lamindb.Run method) (lamindb.Storage method) (lamindb.Transform method) (lamindb.ULabel method) (lamindb.User method) (omop.CareSite method) (omop.CdmSource method) (omop.Cohort method) (omop.CohortDefinition method) (omop.Concept method) (omop.ConceptAncestor method) (omop.ConceptRelationship method) (omop.ConceptSynonym method) (omop.ConditionEra method) (omop.ConditionOccurrence method) (omop.Cost method) (omop.Death method) (omop.DeviceExposure method) (omop.Domain method) (omop.DoseEra method) (omop.DrugEra method) (omop.DrugExposure method) (omop.DrugStrength method) (omop.Episode method) (omop.EpisodeEvent method) (omop.FactRelationship method) (omop.Location method) (omop.Measurement method) (omop.Metadata method) (omop.Note method) (omop.NoteNlp method) (omop.Observation method) (omop.ObservationPeriod method) (omop.PayerPlanPeriod method) (omop.Person method) (omop.ProcedureOccurrence method) (omop.Provider method) (omop.Relationship method) (omop.SourceToConceptMap method) (omop.Specimen method) (omop.VisitDetail method) (omop.VisitOccurrence method) (omop.Vocabulary method) (ourprojects.Reference method) (wetlab.Biosample method) (wetlab.CombinationTreatment method) (wetlab.CompoundTreatment method) (wetlab.EnvironmentalTreatment method) (wetlab.Experiment method) (wetlab.GeneticTreatment method) (wetlab.Techsample method) (wetlab.TreatmentTarget method) (wetlab.Well method) save_artifact() (lamindb.core.AnnDataCurator method) (lamindb.core.BaseCurator method) (lamindb.core.DataFrameCurator method) (lamindb.core.MuDataCurator method) (lamindb.Curator method) save_base() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Source method) (bionty.Tissue method) (cellregistry.Cell method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (findrefs.Reference method) (lamindb.Artifact method) (lamindb.Collection method) (lamindb.core.FeatureValue method) (lamindb.core.IsVersioned method) (lamindb.core.ParamValue method) (lamindb.core.Record method) (lamindb.core.TracksRun method) (lamindb.core.TracksUpdates method) (lamindb.Feature method) (lamindb.FeatureSet method) (lamindb.Param method) (lamindb.Run method) (lamindb.Storage method) (lamindb.Transform method) (lamindb.ULabel method) (lamindb.User method) (omop.CareSite method) (omop.CdmSource method) (omop.Cohort method) (omop.CohortDefinition method) (omop.Concept method) (omop.ConceptAncestor method) (omop.ConceptRelationship method) (omop.ConceptSynonym method) (omop.ConditionEra method) (omop.ConditionOccurrence method) (omop.Cost method) (omop.Death method) (omop.DeviceExposure method) (omop.Domain method) (omop.DoseEra method) (omop.DrugEra method) (omop.DrugExposure method) (omop.DrugStrength method) (omop.Episode method) (omop.EpisodeEvent method) (omop.FactRelationship method) (omop.Location method) (omop.Measurement method) (omop.Metadata method) (omop.Note method) (omop.NoteNlp method) (omop.Observation method) (omop.ObservationPeriod method) (omop.PayerPlanPeriod method) (omop.Person method) (omop.ProcedureOccurrence method) (omop.Provider method) (omop.Relationship method) (omop.SourceToConceptMap method) (omop.Specimen method) (omop.VisitDetail method) (omop.VisitOccurrence method) (omop.Vocabulary method) (ourprojects.Reference method) (wetlab.Biosample method) (wetlab.CombinationTreatment method) (wetlab.CompoundTreatment method) (wetlab.EnvironmentalTreatment method) (wetlab.Experiment method) (wetlab.GeneticTreatment method) (wetlab.Techsample method) (wetlab.TreatmentTarget method) (wetlab.Well method) save_tiledbsoma_experiment() (in module lamindb.integrations) save_vitessce_config() (in module lamindb.integrations) schema (lamindb.setup.core.InstanceSettings property) schmidt22_crispra_gws_IFNG() (in module lamindb.core.datasets) schmidt22_perturbseq() (in module lamindb.core.datasets) scientific_name (bionty.Organism attribute) search() (bionty.base.BFXPipeline method) (bionty.base.BioSample method) (bionty.base.CellLine method) (bionty.base.CellMarker method) (bionty.base.CellType method) (bionty.base.DevelopmentalStage method) (bionty.base.Disease method) (bionty.base.Drug method) (bionty.base.Ethnicity method) (bionty.base.ExperimentalFactor method) (bionty.base.Gene method) (bionty.base.Organism method) (bionty.base.Pathway method) (bionty.base.Phenotype method) (bionty.base.Protein method) (bionty.base.PublicOntology method) (bionty.base.Tissue method) (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.core.StaticReference method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Source class method) (bionty.Tissue class method) (cellregistry.Cell class method) (clinicore.Biosample class method) (clinicore.ClinicalTrial class method) (clinicore.Medication class method) (clinicore.Patient class method) (clinicore.Treatment class method) (findrefs.Reference class method) (lamindb.Artifact class method) (lamindb.Collection class method) (lamindb.core.FeatureValue class method) (lamindb.core.ParamValue class method) (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) (lamindb.core.Record class method) (lamindb.core.Registry method) (lamindb.Feature class method) (lamindb.FeatureSet class method) (lamindb.Param class method) (lamindb.Run class method) (lamindb.Storage class method) (lamindb.Transform class method) (lamindb.ULabel class method) (lamindb.User class method) (omop.CareSite class method) (omop.CdmSource class method) (omop.Cohort class method) (omop.CohortDefinition class method) (omop.Concept class method) (omop.ConceptAncestor class method) (omop.ConceptRelationship class method) (omop.ConceptSynonym class method) (omop.ConditionEra class method) (omop.ConditionOccurrence class method) (omop.Cost class method) (omop.Death class method) (omop.DeviceExposure class method) (omop.Domain class method) (omop.DoseEra class method) (omop.DrugEra class method) (omop.DrugExposure class method) (omop.DrugStrength class method) (omop.Episode class method) (omop.EpisodeEvent class method) (omop.FactRelationship class method) (omop.Location class method) (omop.Measurement class method) (omop.Metadata class method) (omop.Note class method) (omop.NoteNlp class method) (omop.Observation class method) (omop.ObservationPeriod class method) (omop.PayerPlanPeriod class method) (omop.Person class method) (omop.ProcedureOccurrence class method) (omop.Provider class method) (omop.Relationship class method) (omop.SourceToConceptMap class method) (omop.Specimen class method) (omop.VisitDetail class method) (omop.VisitOccurrence class method) (omop.Vocabulary class method) (ourprojects.Reference class method) (wetlab.Biosample class method) (wetlab.CombinationTreatment class method) (wetlab.CompoundTreatment class method) (wetlab.EnvironmentalTreatment class method) (wetlab.Experiment class method) (wetlab.GeneticTreatment class method) (wetlab.Techsample class method) (wetlab.TreatmentTarget class method) (wetlab.Well class method) search_names (lamindb.core.subsettings.CreationSettings attribute) section_concept (omop.NoteNlp attribute) select_for_update() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) select_related() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) sequence (wetlab.GeneticTreatment attribute) serializable_value() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Source method) (bionty.Tissue method) (cellregistry.Cell method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (findrefs.Reference method) (lamindb.Artifact method) (lamindb.Collection method) (lamindb.core.FeatureValue method) (lamindb.core.IsVersioned method) (lamindb.core.ParamValue method) (lamindb.core.Record method) (lamindb.core.TracksRun method) (lamindb.core.TracksUpdates method) (lamindb.Feature method) (lamindb.FeatureSet method) (lamindb.Param method) (lamindb.Run method) (lamindb.Storage method) (lamindb.Transform method) (lamindb.ULabel method) (lamindb.User method) (omop.CareSite method) (omop.CdmSource method) (omop.Cohort method) (omop.CohortDefinition method) (omop.Concept method) (omop.ConceptAncestor method) (omop.ConceptRelationship method) (omop.ConceptSynonym method) (omop.ConditionEra method) (omop.ConditionOccurrence method) (omop.Cost method) (omop.Death method) (omop.DeviceExposure method) (omop.Domain method) (omop.DoseEra method) (omop.DrugEra method) (omop.DrugExposure method) (omop.DrugStrength method) (omop.Episode method) (omop.EpisodeEvent method) (omop.FactRelationship method) (omop.Location method) (omop.Measurement method) (omop.Metadata method) (omop.Note method) (omop.NoteNlp method) (omop.Observation method) (omop.ObservationPeriod method) (omop.PayerPlanPeriod method) (omop.Person method) (omop.ProcedureOccurrence method) (omop.Provider method) (omop.Relationship method) (omop.SourceToConceptMap method) (omop.Specimen method) (omop.VisitDetail method) (omop.VisitOccurrence method) (omop.Vocabulary method) (ourprojects.Reference method) (wetlab.Biosample method) (wetlab.CombinationTreatment method) (wetlab.CompoundTreatment method) (wetlab.EnvironmentalTreatment method) (wetlab.Experiment method) (wetlab.GeneticTreatment method) (wetlab.Techsample method) (wetlab.TreatmentTarget method) (wetlab.Well method)

set_abbr() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Tissue method) (cellregistry.Cell method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (findrefs.Reference method) (lamindb.core.CanValidate method) (lamindb.Feature method) (lamindb.Param method) (lamindb.ULabel method) (lamindb.User method) (omop.CareSite method) (omop.CdmSource method) (omop.Cohort method) (omop.CohortDefinition method) (omop.Concept method) (omop.ConceptAncestor method) (omop.ConceptRelationship method) (omop.ConceptSynonym method) (omop.ConditionEra method) (omop.ConditionOccurrence method) (omop.Cost method) (omop.Death method) (omop.DeviceExposure method) (omop.Domain method) (omop.DoseEra method) (omop.DrugEra method) (omop.DrugExposure method) (omop.DrugStrength method) (omop.Episode method) (omop.EpisodeEvent method) (omop.FactRelationship method) (omop.Location method) (omop.Measurement method) (omop.Metadata method) (omop.Note method) (omop.NoteNlp method) (omop.Observation method) (omop.ObservationPeriod method) (omop.PayerPlanPeriod method) (omop.Person method) (omop.ProcedureOccurrence method) (omop.Provider method) (omop.Relationship method) (omop.SourceToConceptMap method) (omop.Specimen method) (omop.VisitDetail method) (omop.VisitOccurrence method) (omop.Vocabulary method) (ourprojects.Reference method) (wetlab.Biosample method) (wetlab.CombinationTreatment method) (wetlab.CompoundTreatment method) (wetlab.EnvironmentalTreatment method) (wetlab.Experiment method) (wetlab.GeneticTreatment method) (wetlab.Techsample method) (wetlab.TreatmentTarget method) (wetlab.Well method) set_as_currently_used() (bionty.Source method) set_latest_sources_as_currently_used() (in module bionty.core) Settings (class in bionty.core) (class in lamindb.core) settings (in module bionty) (in module bionty.base) (in module lamindb) (in module lamindb.setup) settings_dir (lamindb.setup.core.SetupSettings property) SetupSettings (class in lamindb.setup.core) shape (lamindb.core.MappedCollection property) show() (lamindb.setup.migrate class method) sig (omop.DrugExposure attribute) SIMPLE (lamindb.core.storage.VALID_SUFFIXES attribute) site (clinicore.Treatment attribute) size (lamindb.Artifact attribute) slug (lamindb.setup.core.InstanceSettings property) snippet (omop.NoteNlp attribute) sort() (lamindb.core.RecordsList method) source (bionty.base.BFXPipeline property) (bionty.base.BioSample property) (bionty.base.CellLine property) (bionty.base.CellMarker property) (bionty.base.CellType property) (bionty.base.DevelopmentalStage property) (bionty.base.Disease property) (bionty.base.Drug property) (bionty.base.Ethnicity property) (bionty.base.ExperimentalFactor property) (bionty.base.Gene property) (bionty.base.Organism property) (bionty.base.Pathway property) (bionty.base.Phenotype property) (bionty.base.Protein property) (bionty.base.PublicOntology property) (bionty.base.Tissue property) (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.core.BioRecord attribute) (bionty.core.StaticReference property) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Tissue attribute) Source (class in bionty) source (clinicore.Medication attribute) source_code (lamindb.Transform attribute) (omop.SourceToConceptMap attribute) source_code_description (omop.SourceToConceptMap attribute) source_concept (omop.SourceToConceptMap attribute) source_description (omop.CdmSource attribute) source_documentation_reference (omop.CdmSource attribute) source_release_date (omop.CdmSource attribute) source_vocabulary_id (omop.SourceToConceptMap attribute) source_website (bionty.Source attribute) SourceToConceptMap (class in omop) specialty_concept (omop.Provider attribute) specialty_source_concept (omop.Provider attribute) specialty_source_value (omop.Provider attribute) Specimen (class in omop) specimen_concept (omop.Specimen attribute) specimen_date (omop.Specimen attribute) specimen_datetime (omop.Specimen attribute) specimen_id (omop.Specimen attribute) specimen_source_id (omop.Specimen attribute) specimen_source_value (omop.Specimen attribute) specimen_type_concept (omop.Specimen attribute) sponsor_concept (omop.PayerPlanPeriod attribute) sponsor_source_concept (omop.PayerPlanPeriod attribute) sponsor_source_value (omop.PayerPlanPeriod attribute) squash() (lamindb.setup.migrate class method) stable_id (bionty.Gene attribute) standard_concept (omop.Concept attribute) standardize() (bionty.base.BFXPipeline method) (bionty.base.BioSample method) (bionty.base.CellLine method) (bionty.base.CellMarker method) (bionty.base.CellType method) (bionty.base.DevelopmentalStage method) (bionty.base.Disease method) (bionty.base.Drug method) (bionty.base.Ethnicity method) (bionty.base.ExperimentalFactor method) (bionty.base.Gene method) (bionty.base.Organism method) (bionty.base.Pathway method) (bionty.base.Phenotype method) (bionty.base.Protein method) (bionty.base.PublicOntology method) (bionty.base.Tissue method) (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.core.StaticReference method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (cellregistry.Cell class method) (clinicore.Biosample class method) (clinicore.ClinicalTrial class method) (clinicore.Medication class method) (clinicore.Patient class method) (clinicore.Treatment class method) (findrefs.Reference class method) (lamindb.core.CanValidate class method) (lamindb.core.QuerySet method) (lamindb.Feature class method) (lamindb.Param class method) (lamindb.ULabel class method) (lamindb.User class method) (omop.CareSite class method) (omop.CdmSource class method) (omop.Cohort class method) (omop.CohortDefinition class method) (omop.Concept class method) (omop.ConceptAncestor class method) (omop.ConceptRelationship class method) (omop.ConceptSynonym class method) (omop.ConditionEra class method) (omop.ConditionOccurrence class method) (omop.Cost class method) (omop.Death class method) (omop.DeviceExposure class method) (omop.Domain class method) (omop.DoseEra class method) (omop.DrugEra class method) (omop.DrugExposure class method) (omop.DrugStrength class method) (omop.Episode class method) (omop.EpisodeEvent class method) (omop.FactRelationship class method) (omop.Location class method) (omop.Measurement class method) (omop.Metadata class method) (omop.Note class method) (omop.NoteNlp class method) (omop.Observation class method) (omop.ObservationPeriod class method) (omop.PayerPlanPeriod class method) (omop.Person class method) (omop.ProcedureOccurrence class method) (omop.Provider class method) (omop.Relationship class method) (omop.SourceToConceptMap class method) (omop.Specimen class method) (omop.VisitDetail class method) (omop.VisitOccurrence class method) (omop.Vocabulary class method) (ourprojects.Reference class method) (wetlab.Biosample class method) (wetlab.CombinationTreatment class method) (wetlab.CompoundTreatment class method) (wetlab.EnvironmentalTreatment class method) (wetlab.Experiment class method) (wetlab.GeneticTreatment class method) (wetlab.Techsample class method) (wetlab.TreatmentTarget class method) (wetlab.Well class method) started_at (lamindb.Run attribute) stat() (lamindb.UPath method) state (omop.Location attribute) StaticReference (class in bionty.core) status (clinicore.Treatment attribute) STATUS_CHOICES (clinicore.Treatment attribute) stem (lamindb.UPath property) stem_uid (lamindb.core.IsVersioned property) (lamindb.core.subsettings.TransformSettings attribute) stop_reason (omop.ConditionOccurrence attribute) (omop.DrugExposure attribute) stop_reason_concept (omop.PayerPlanPeriod attribute) stop_reason_source_concept (omop.PayerPlanPeriod attribute) stop_reason_source_value (omop.PayerPlanPeriod attribute) Storage (class in lamindb) storage (lamindb.Artifact attribute) (lamindb.core.Settings property) (lamindb.setup.core.InstanceSettings property) (lamindb.setup.core.SetupSettings property) storage_local (lamindb.core.Settings property) (lamindb.setup.core.InstanceSettings property) storage_options (lamindb.UPath property) StorageSettings (class in lamindb.setup.core) StrField (in module lamindb.core.types) subject_concept (omop.CohortDefinition attribute) subject_id (omop.Cohort attribute) successors (lamindb.Transform attribute) suffix (lamindb.Artifact attribute) (lamindb.UPath property) suffixes (lamindb.UPath property) SUPPORTED_SUFFIXES (in module lamindb.core.loaders) symbol (bionty.Gene attribute) symlink_to() (lamindb.UPath method) sync_all_sources_to_latest() (in module bionty.core) sync_git_repo (lamindb.core.Settings property) synchronize() (lamindb.UPath method) synonym_types() (bionty.base.Ontology method) synonyms (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Tissue attribute) (clinicore.Medication attribute) (lamindb.Feature attribute) synonyms_mapper (lamindb.core.InspectResult property) system (wetlab.GeneticTreatment attribute)

T

target_concept (omop.SourceToConceptMap attribute) target_vocabulary (omop.SourceToConceptMap attribute) targets (wetlab.CompoundTreatment attribute) (wetlab.EnvironmentalTreatment attribute) (wetlab.GeneticTreatment attribute) Techsample (class in wetlab) term_exists (omop.NoteNlp attribute) term_modifiers (omop.NoteNlp attribute) term_temporal (omop.NoteNlp attribute) terms() (bionty.base.Ontology method) text (findrefs.Reference attribute) (ourprojects.Reference attribute) Tissue (class in bionty) (class in bionty.base) tissues (clinicore.Biosample attribute) (wetlab.Biosample attribute) title (clinicore.ClinicalTrial attribute) to_df() (bionty.base.Ontology method) to_dict() (lamindb.core.storage.AnnDataAccessor method) to_memory() (lamindb.core.storage.AnnDataAccessor method) to_pronto() (bionty.base.BFXPipeline method) (bionty.base.BioSample method) (bionty.base.CellLine method) (bionty.base.CellMarker method) (bionty.base.CellType method) (bionty.base.DevelopmentalStage method) (bionty.base.Disease method) (bionty.base.Drug method) (bionty.base.Ethnicity method) (bionty.base.ExperimentalFactor method) (bionty.base.Gene method) (bionty.base.Organism method) (bionty.base.Pathway method) (bionty.base.Phenotype method) (bionty.base.Protein method) (bionty.base.PublicOntology method) (bionty.base.Tissue method) (bionty.core.StaticReference method)

to_url() (lamindb.UPath method) total_charge (omop.Cost attribute) total_cost (omop.Cost attribute) total_paid (omop.Cost attribute) touch() (lamindb.UPath method) track() (in module lamindb) (lamindb.core.Context method) track_run_inputs (lamindb.core.Settings attribute) TracksRun (class in lamindb.core) TracksUpdates (class in lamindb.core) Transform (class in lamindb) transform (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.core.Context property) (lamindb.core.Settings property) (lamindb.Run attribute) transforms (lamindb.ULabel attribute) TransformSettings (class in lamindb.core.subsettings) TransformType (in module lamindb.core.types) Treatment (class in clinicore) TreatmentTarget (class in wetlab) type (lamindb.Artifact attribute) (lamindb.setup.core.StorageSettings property) (lamindb.Storage attribute) (lamindb.Transform attribute) type_is_cloud (lamindb.setup.core.StorageSettings property)

U

uid (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) (cellregistry.Cell attribute) (clinicore.Biosample attribute) (clinicore.ClinicalTrial attribute) (clinicore.Medication attribute) (clinicore.Patient attribute) (clinicore.Treatment attribute) (findrefs.Reference attribute) (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.core.Context property) (lamindb.Feature attribute) (lamindb.FeatureSet attribute) (lamindb.Run attribute) (lamindb.setup.core.InstanceSettings property) (lamindb.setup.core.StorageSettings property) (lamindb.setup.core.UserSettings attribute) (lamindb.Storage attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) (lamindb.User attribute) (ourprojects.Reference attribute) (wetlab.Biosample attribute) (wetlab.CombinationTreatment attribute) (wetlab.CompoundTreatment attribute) (wetlab.EnvironmentalTreatment attribute) (wetlab.Experiment attribute) (wetlab.GeneticTreatment attribute) (wetlab.Techsample attribute) (wetlab.TreatmentTarget attribute) (wetlab.Well attribute) ULabel (class in lamindb) ulabels (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.Transform attribute) union() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) uniprotkb_id (bionty.CellMarker attribute) (bionty.Protein attribute) unique_device_id (omop.DeviceExposure attribute) unique_error_message() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Source method) (bionty.Tissue method) (cellregistry.Cell method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (findrefs.Reference method) (lamindb.Artifact method) (lamindb.Collection method) (lamindb.core.FeatureValue method) (lamindb.core.IsVersioned method) (lamindb.core.ParamValue method) (lamindb.core.Record method) (lamindb.core.TracksRun method) (lamindb.core.TracksUpdates method) (lamindb.Feature method) (lamindb.FeatureSet method) (lamindb.Param method) (lamindb.Run method) (lamindb.Storage method) (lamindb.Transform method) (lamindb.ULabel method) (lamindb.User method) (omop.CareSite method) (omop.CdmSource method) (omop.Cohort method) (omop.CohortDefinition method) (omop.Concept method) (omop.ConceptAncestor method) (omop.ConceptRelationship method) (omop.ConceptSynonym method) (omop.ConditionEra method) (omop.ConditionOccurrence method) (omop.Cost method) (omop.Death method) (omop.DeviceExposure method) (omop.Domain method) (omop.DoseEra method) (omop.DrugEra method) (omop.DrugExposure method) (omop.DrugStrength method) (omop.Episode method) (omop.EpisodeEvent method) (omop.FactRelationship method) (omop.Location method) (omop.Measurement method) (omop.Metadata method) (omop.Note method) (omop.NoteNlp method) (omop.Observation method) (omop.ObservationPeriod method) (omop.PayerPlanPeriod method) (omop.Person method) (omop.ProcedureOccurrence method) (omop.Provider method) (omop.Relationship method) (omop.SourceToConceptMap method) (omop.Specimen method) (omop.VisitDetail method) (omop.VisitOccurrence method) (omop.Vocabulary method) (ourprojects.Reference method) (wetlab.Biosample method) (wetlab.CombinationTreatment method) (wetlab.CompoundTreatment method) (wetlab.EnvironmentalTreatment method) (wetlab.Experiment method) (wetlab.GeneticTreatment method) (wetlab.Techsample method) (wetlab.TreatmentTarget method) (wetlab.Well method) unit (lamindb.Feature attribute) (wetlab.EnvironmentalTreatment attribute) unit_concept (omop.DeviceExposure attribute) (omop.DoseEra attribute) (omop.Measurement attribute) (omop.Observation attribute) (omop.Specimen attribute)

unit_source_concept (omop.DeviceExposure attribute) (omop.Measurement attribute) unit_source_value (omop.DeviceExposure attribute) (omop.Measurement attribute) (omop.Observation attribute) (omop.Specimen attribute) unlink() (lamindb.UPath method) UPath (class in lamindb) UPathStr (in module lamindb.core.types) update() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) update_or_create() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) UpdateContext updated_at (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) (cellregistry.Cell attribute) (clinicore.Biosample attribute) (clinicore.ClinicalTrial attribute) (clinicore.Medication attribute) (clinicore.Patient attribute) (clinicore.Treatment attribute) (findrefs.Reference attribute) (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.Feature attribute) (lamindb.Param attribute) (lamindb.Storage attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) (lamindb.User attribute) (ourprojects.Reference attribute) (wetlab.Biosample attribute) (wetlab.CombinationTreatment attribute) (wetlab.CompoundTreatment attribute) (wetlab.EnvironmentalTreatment attribute) (wetlab.Experiment attribute) (wetlab.GeneticTreatment attribute) (wetlab.Techsample attribute) (wetlab.TreatmentTarget attribute) (wetlab.Well attribute) upload_from() (lamindb.UPath method) url (bionty.Source attribute) (findrefs.Reference attribute) (ourprojects.Reference attribute) use_in_migrations (lamindb.core.QueryManager attribute) User (class in lamindb) user (lamindb.setup.core.SetupSettings property) UserSettings (class in lamindb.setup.core) using() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Source class method) (bionty.Tissue class method) (cellregistry.Cell class method) (clinicore.Biosample class method) (clinicore.ClinicalTrial class method) (clinicore.Medication class method) (clinicore.Patient class method) (clinicore.Treatment class method) (findrefs.Reference class method) (lamindb.Artifact class method) (lamindb.Collection class method) (lamindb.core.FeatureValue class method) (lamindb.core.ParamValue class method) (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) (lamindb.core.Record class method) (lamindb.core.Registry method) (lamindb.Feature class method) (lamindb.FeatureSet class method) (lamindb.Param class method) (lamindb.Run class method) (lamindb.Storage class method) (lamindb.Transform class method) (lamindb.ULabel class method) (lamindb.User class method) (omop.CareSite class method) (omop.CdmSource class method) (omop.Cohort class method) (omop.CohortDefinition class method) (omop.Concept class method) (omop.ConceptAncestor class method) (omop.ConceptRelationship class method) (omop.ConceptSynonym class method) (omop.ConditionEra class method) (omop.ConditionOccurrence class method) (omop.Cost class method) (omop.Death class method) (omop.DeviceExposure class method) (omop.Domain class method) (omop.DoseEra class method) (omop.DrugEra class method) (omop.DrugExposure class method) (omop.DrugStrength class method) (omop.Episode class method) (omop.EpisodeEvent class method) (omop.FactRelationship class method) (omop.Location class method) (omop.Measurement class method) (omop.Metadata class method) (omop.Note class method) (omop.NoteNlp class method) (omop.Observation class method) (omop.ObservationPeriod class method) (omop.PayerPlanPeriod class method) (omop.Person class method) (omop.ProcedureOccurrence class method) (omop.Provider class method) (omop.Relationship class method) (omop.SourceToConceptMap class method) (omop.Specimen class method) (omop.VisitDetail class method) (omop.VisitOccurrence class method) (omop.Vocabulary class method) (ourprojects.Reference class method) (wetlab.Biosample class method) (wetlab.CombinationTreatment class method) (wetlab.CompoundTreatment class method) (wetlab.EnvironmentalTreatment class method) (wetlab.Experiment class method) (wetlab.GeneticTreatment class method) (wetlab.Techsample class method) (wetlab.TreatmentTarget class method) (wetlab.Well class method)

V

valid_end_date (omop.Concept attribute) (omop.ConceptRelationship attribute) (omop.DrugStrength attribute) (omop.SourceToConceptMap attribute) valid_start_date (omop.Concept attribute) (omop.ConceptRelationship attribute) (omop.DrugStrength attribute) (omop.SourceToConceptMap attribute) VALID_SUFFIXES (class in lamindb.core.storage) validate() (bionty.base.BFXPipeline method) (bionty.base.BioSample method) (bionty.base.CellLine method) (bionty.base.CellMarker method) (bionty.base.CellType method) (bionty.base.DevelopmentalStage method) (bionty.base.Disease method) (bionty.base.Drug method) (bionty.base.Ethnicity method) (bionty.base.ExperimentalFactor method) (bionty.base.Gene method) (bionty.base.Organism method) (bionty.base.Pathway method) (bionty.base.Phenotype method) (bionty.base.Protein method) (bionty.base.PublicOntology method) (bionty.base.Tissue method) (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.core.StaticReference method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (cellregistry.Cell class method) (clinicore.Biosample class method) (clinicore.ClinicalTrial class method) (clinicore.Medication class method) (clinicore.Patient class method) (clinicore.Treatment class method) (findrefs.Reference class method) (lamindb.core.AnnDataCurator method) (lamindb.core.BaseCurator method) (lamindb.core.CanValidate class method) (lamindb.core.DataFrameCurator method) (lamindb.core.MuDataCurator method) (lamindb.core.QuerySet method) (lamindb.Curator method) (lamindb.Feature class method) (lamindb.Param class method) (lamindb.ULabel class method) (lamindb.User class method) (omop.CareSite class method) (omop.CdmSource class method) (omop.Cohort class method) (omop.CohortDefinition class method) (omop.Concept class method) (omop.ConceptAncestor class method) (omop.ConceptRelationship class method) (omop.ConceptSynonym class method) (omop.ConditionEra class method) (omop.ConditionOccurrence class method) (omop.Cost class method) (omop.Death class method) (omop.DeviceExposure class method) (omop.Domain class method) (omop.DoseEra class method) (omop.DrugEra class method) (omop.DrugExposure class method) (omop.DrugStrength class method) (omop.Episode class method) (omop.EpisodeEvent class method) (omop.FactRelationship class method) (omop.Location class method) (omop.Measurement class method) (omop.Metadata class method) (omop.Note class method) (omop.NoteNlp class method) (omop.Observation class method) (omop.ObservationPeriod class method) (omop.PayerPlanPeriod class method) (omop.Person class method) (omop.ProcedureOccurrence class method) (omop.Provider class method) (omop.Relationship class method) (omop.SourceToConceptMap class method) (omop.Specimen class method) (omop.VisitDetail class method) (omop.VisitOccurrence class method) (omop.Vocabulary class method) (ourprojects.Reference class method) (wetlab.Biosample class method) (wetlab.CombinationTreatment class method) (wetlab.CompoundTreatment class method) (wetlab.EnvironmentalTreatment class method) (wetlab.Experiment class method) (wetlab.GeneticTreatment class method) (wetlab.Techsample class method) (wetlab.TreatmentTarget class method) (wetlab.Well class method) validate_constraints() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Source method) (bionty.Tissue method) (cellregistry.Cell method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (findrefs.Reference method) (lamindb.Artifact method) (lamindb.Collection method) (lamindb.core.FeatureValue method) (lamindb.core.IsVersioned method) (lamindb.core.ParamValue method) (lamindb.core.Record method) (lamindb.core.TracksRun method) (lamindb.core.TracksUpdates method) (lamindb.Feature method) (lamindb.FeatureSet method) (lamindb.Param method) (lamindb.Run method) (lamindb.Storage method) (lamindb.Transform method) (lamindb.ULabel method) (lamindb.User method) (omop.CareSite method) (omop.CdmSource method) (omop.Cohort method) (omop.CohortDefinition method) (omop.Concept method) (omop.ConceptAncestor method) (omop.ConceptRelationship method) (omop.ConceptSynonym method) (omop.ConditionEra method) (omop.ConditionOccurrence method) (omop.Cost method) (omop.Death method) (omop.DeviceExposure method) (omop.Domain method) (omop.DoseEra method) (omop.DrugEra method) (omop.DrugExposure method) (omop.DrugStrength method) (omop.Episode method) (omop.EpisodeEvent method) (omop.FactRelationship method) (omop.Location method) (omop.Measurement method) (omop.Metadata method) (omop.Note method) (omop.NoteNlp method) (omop.Observation method) (omop.ObservationPeriod method) (omop.PayerPlanPeriod method) (omop.Person method) (omop.ProcedureOccurrence method) (omop.Provider method) (omop.Relationship method) (omop.SourceToConceptMap method) (omop.Specimen method) (omop.VisitDetail method) (omop.VisitOccurrence method) (omop.Vocabulary method) (ourprojects.Reference method) (wetlab.Biosample method) (wetlab.CombinationTreatment method) (wetlab.CompoundTreatment method) (wetlab.EnvironmentalTreatment method) (wetlab.Experiment method) (wetlab.GeneticTreatment method) (wetlab.Techsample method) (wetlab.TreatmentTarget method) (wetlab.Well method) validate_unique() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Source method) (bionty.Tissue method) (cellregistry.Cell method) (clinicore.Biosample method) (clinicore.ClinicalTrial method) (clinicore.Medication method) (clinicore.Patient method) (clinicore.Treatment method) (findrefs.Reference method) (lamindb.Artifact method) (lamindb.Collection method) (lamindb.core.FeatureValue method) (lamindb.core.IsVersioned method) (lamindb.core.ParamValue method) (lamindb.core.Record method) (lamindb.core.TracksRun method) (lamindb.core.TracksUpdates method) (lamindb.Feature method) (lamindb.FeatureSet method) (lamindb.Param method) (lamindb.Run method) (lamindb.Storage method) (lamindb.Transform method) (lamindb.ULabel method) (lamindb.User method) (omop.CareSite method) (omop.CdmSource method) (omop.Cohort method) (omop.CohortDefinition method) (omop.Concept method) (omop.ConceptAncestor method) (omop.ConceptRelationship method) (omop.ConceptSynonym method) (omop.ConditionEra method) (omop.ConditionOccurrence method) (omop.Cost method) (omop.Death method) (omop.DeviceExposure method) (omop.Domain method) (omop.DoseEra method) (omop.DrugEra method) (omop.DrugExposure method) (omop.DrugStrength method) (omop.Episode method) (omop.EpisodeEvent method) (omop.FactRelationship method) (omop.Location method) (omop.Measurement method) (omop.Metadata method) (omop.Note method) (omop.NoteNlp method) (omop.Observation method) (omop.ObservationPeriod method) (omop.PayerPlanPeriod method) (omop.Person method) (omop.ProcedureOccurrence method) (omop.Provider method) (omop.Relationship method) (omop.SourceToConceptMap method) (omop.Specimen method) (omop.VisitDetail method) (omop.VisitOccurrence method) (omop.Vocabulary method) (ourprojects.Reference method) (wetlab.Biosample method) (wetlab.CombinationTreatment method) (wetlab.CompoundTreatment method) (wetlab.EnvironmentalTreatment method) (wetlab.Experiment method) (wetlab.GeneticTreatment method) (wetlab.Techsample method) (wetlab.TreatmentTarget method) (wetlab.Well method)

validated (lamindb.core.InspectResult property) ValidationError value (lamindb.core.FeatureValue attribute) (lamindb.core.ParamValue attribute) (wetlab.EnvironmentalTreatment attribute) value_as_concept (omop.Measurement attribute) (omop.Metadata attribute) (omop.Observation attribute) value_as_number (omop.Measurement attribute) (omop.Metadata attribute) (omop.Observation attribute) value_as_string (omop.Metadata attribute) (omop.Observation attribute) value_source_value (omop.Measurement attribute) (omop.Observation attribute) values (lamindb.Feature attribute) (lamindb.Param attribute) values() (bionty.base.Ontology method) (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) values_list() (lamindb.core.QueryManager method) (lamindb.core.QuerySet method) var_index (lamindb.core.AnnDataCurator property) (lamindb.core.MuDataCurator property) var_names (lamindb.core.storage.AnnDataAccessor property) verbatim_end_date (omop.DrugExposure attribute) verbosity (lamindb.core.Settings property) version (bionty.base.BFXPipeline property) (bionty.base.BioSample property) (bionty.base.CellLine property) (bionty.base.CellMarker property) (bionty.base.CellType property) (bionty.base.DevelopmentalStage property) (bionty.base.Disease property) (bionty.base.Drug property) (bionty.base.Ethnicity property) (bionty.base.ExperimentalFactor property) (bionty.base.Gene property) (bionty.base.Organism property) (bionty.base.Pathway property) (bionty.base.Phenotype property) (bionty.base.Protein property) (bionty.base.PublicOntology property) (bionty.base.Tissue property) (bionty.core.StaticReference property) (bionty.Source attribute) (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.core.Context property) (lamindb.core.subsettings.TransformSettings attribute) (lamindb.Transform attribute) versions (lamindb.core.IsVersioned property) view() (in module lamindb) view_lineage() (lamindb.Artifact method) (lamindb.Collection method) (lamindb.Transform method) view_parents() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Tissue method) (clinicore.Medication method) (lamindb.core.HasParents method) (lamindb.ULabel method) view_tree() (lamindb.UPath method) visibility (lamindb.Artifact attribute) (lamindb.Collection attribute) visit_concept (omop.VisitOccurrence attribute) visit_detail (omop.ConditionOccurrence attribute) (omop.DeviceExposure attribute) (omop.DrugExposure attribute) (omop.Measurement attribute) (omop.Note attribute) (omop.Observation attribute) (omop.ProcedureOccurrence attribute) visit_detail_concept (omop.VisitDetail attribute) visit_detail_end_date (omop.VisitDetail attribute) visit_detail_end_datetime (omop.VisitDetail attribute) visit_detail_id (omop.VisitDetail attribute) visit_detail_source_concept (omop.VisitDetail attribute) visit_detail_source_value (omop.VisitDetail attribute) visit_detail_start_date (omop.VisitDetail attribute) visit_detail_start_datetime (omop.VisitDetail attribute) visit_detail_type_concept (omop.VisitDetail attribute) visit_end_date (omop.VisitOccurrence attribute) visit_end_datetime (omop.VisitOccurrence attribute) visit_occurrence (omop.ConditionOccurrence attribute) (omop.DeviceExposure attribute) (omop.DrugExposure attribute) (omop.Measurement attribute) (omop.Note attribute) (omop.Observation attribute) (omop.ProcedureOccurrence attribute) (omop.VisitDetail attribute) visit_occurrence_id (omop.VisitOccurrence attribute) visit_source_concept (omop.VisitOccurrence attribute) visit_source_value (omop.VisitOccurrence attribute) visit_start_date (omop.VisitOccurrence attribute) visit_start_datetime (omop.VisitOccurrence attribute) visit_type_concept (omop.VisitOccurrence attribute) VisitDetail (class in omop) VisitOccurrence (class in omop) Vocabulary (class in omop) vocabulary_concept (omop.Vocabulary attribute) vocabulary_id (omop.Concept attribute) (omop.Vocabulary attribute) vocabulary_name (omop.Vocabulary attribute) vocabulary_reference (omop.Vocabulary attribute) vocabulary_version (omop.CdmSource attribute) (omop.Vocabulary attribute)

W

Well (class in wetlab) wetlab module with_name() (lamindb.UPath method)

with_segments() (lamindb.UPath method) with_stem() (lamindb.UPath method) with_suffix() (lamindb.UPath method) write_bytes() (lamindb.UPath method) write_text() (lamindb.UPath method)

Y

year_of_birth (omop.Person attribute) (omop.Provider attribute)

Z

zip (omop.Location attribute)